| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3732 |
|---|
| Symbol | |
|---|
| ID | 8359900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4690937 |
|---|
| End bp | 4692118 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644965901 |
|---|
| Product | Cystathionine gamma-lyase |
|---|
| Protein accession | YP_003123395 |
|---|
| Protein GI | 256422742 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.136347 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAG ACCAATACCG GCCGGAGACC AATGCAGTAA GGATCCAGAC AGAAAAGACG
TGGCAGATGG AACACTCCAC GCCTTTGTTC CTTACTTCCA GCTTTACTTA TGACAGCGCG
GAAGAGATGC GTGCTACCTT CGCAGATGAA ACGGATAATA ATATCTATAC CCGTTTCAGC
AATCCGAACG TAGATGAATT CGTACAGAAA GTATGCGCCC TGGAAGGTGC AGAAGCCGGA
TTCGCTACTG CCTCTGGTAT GAGTGCGGTA TTTGCCAGCT TTATGGCCCT GATGAACGCC
GGCGATCACC TGGTGTCAGC CAGTTCTATT TTTGGTTCCA CACATACCAT TATCACGAAG
TTTCTCCCTA AATGGGGTAT CGAACATAGC TATTTTGATA TCAACAAACC GGAGACCGTT
GAAGCGCTGA TCAAGCCGAA TACAAAGATG ATCTTCGTGG AAACGCCTTC TAACCCGGGG
CTGGAAATCG TTGACCTGAG TGTGCTGGCA GCTATTGCCA ACAAGCACAA CGTCATCCTG
AACGTGGACA ACTGTTTCGC AACACCGGTA CTGCAACGTC CTATTGAAAC GGGCGCCCAT
ATCGTGACCC ACTCCGCTAC CAAATGGATG GACGGACAGG GCCGCGTACT GGGAGGCGTT
GTGGTAGGTC GTAAAGACCT TATCAAAGAA GTACATACCT TCTGCCGCAG CACCGGACCA
GCCATGTCGC CGTTCAACGC ATGGGTACTC AGCAAAAGCC TGGAAACCCT GCACATCCGT
ATGGCGCGTC ATTCTGAAAG CGCACTGATA CTGGCTAAAG CATTGGAAAA CAATCCGCAT
ATCAGCTGGG TGAAATACCC GATGCTGGAA AGTCATCCAC AGCACGCGAT CGCTAAAAAA
CAAATGAGCG CAGGTGGCGG TATCGTATGT TTCGAACTGA AAGGCGGTCT GCAAAGCGGT
ACCCGTTTCC TCGATGCATT GAAGATGCTG ACGCTGACCG CCAATCTGGG CGACAGCAGA
AGTATTGCTT CCCATCCGGC CAGCACGACA CATGCGAAAC TGACCGATGC GGAGCGTGCA
CAGGTGGGTA TTACACCGGG TATGATCCGT ATTTCTGTCG GACTGGAAAA CGCACAGGAC
ATCCTGGAGG ATATCCTGCA GGCACTTGAA CAAAGTAAAT AG
|
|---|
| Protein sequence | MEKDQYRPET NAVRIQTEKT WQMEHSTPLF LTSSFTYDSA EEMRATFADE TDNNIYTRFS
NPNVDEFVQK VCALEGAEAG FATASGMSAV FASFMALMNA GDHLVSASSI FGSTHTIITK
FLPKWGIEHS YFDINKPETV EALIKPNTKM IFVETPSNPG LEIVDLSVLA AIANKHNVIL
NVDNCFATPV LQRPIETGAH IVTHSATKWM DGQGRVLGGV VVGRKDLIKE VHTFCRSTGP
AMSPFNAWVL SKSLETLHIR MARHSESALI LAKALENNPH ISWVKYPMLE SHPQHAIAKK
QMSAGGGIVC FELKGGLQSG TRFLDALKML TLTANLGDSR SIASHPASTT HAKLTDAERA
QVGITPGMIR ISVGLENAQD ILEDILQALE QSK
|
|---|
| |