Gene Cpin_3722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3722 
Symbol 
ID8359890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4676108 
End bp4677211 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content46% 
IMG OID644965891 
ProductGTP-binding protein YchF 
Protein accessionYP_003123385 
Protein GI256422732 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0012] Predicted GTPase, probable translation factor 
TIGRFAM ID[TIGR00092] GTP-binding protein YchF 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0380878 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0334593 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTAC AAGTAGGAAT TGTTGGATTA CCAAATGTGG GAAAGTCGAC ATTATTTAAT 
GCGGTGAGCA ACAGCGCAAA AGCGCAGGCG AGCAATTATC GTTTTTGCAC AATTGAACCT
AACGTAGGAC TTGTAGACGT ACCGGACGAG CGTCTGGCAA AGCTGGAAGA ACTTGTAAAA
CCGGAACGCG TAGTTCCTAC TACTATTGAA TTCGTAGATA TCGCAGGCCT TGTAAAAGGT
GCGAGCAAGG GCGAAGGTCT TGGTAACAAG TTCCTCGCTA ATATCCGTGA GGTAGACGCC
ATCGTGCATG TGATCCGTTG TTTCGAGGAT GAAAACATCC TGAGAGAAGA AGGTGCCATC
AATCCTGTCG GCGATAAAGA GATCATCGAT ACTGAATTGC AGCTGAAAGA CCTGGAGAGC
GTTGAAAAGA AAATCGCGCG TACCGAGAAA ATGGCTAAAA CAGGTGGTGA TCCGAAAGCA
AAAGTAGAAT TCGAAATCCT GAAGAGATGT CAGGCGCATC TGGAACAGGG TAAAAATGTT
CGCGAACTGG GTCTGAGCAA AGAAGAGCGC GTAGCCATCG CGGATCTGTT CCTGCTGACA
GAAAAACCAG TACTGTATGT GGCCAATGTG GATGAAGCAT CTATGCTGAC CGGTAACAAA
TTCTCTGTAC AGCTGCAGGA ATCTGTAAAA GCAGAAAACG CAACGGTTGT AGTGATGAAC
AACAGTATCG AAGCCCAGAT CTCCGAAATG GAAGACGCAG CTGATAAAGA ACTGTTCCTC
TCCGAATATA ATCTGACAGA ACCAGGTCTT AACCGCCTGA TCCGTTCTGC TTATAGCCTG
CTGAACCTGA TCACTTATTT CACCGCTGGT GTACAGGAAG TGAGAGCATG GACCATCCAC
ACAGGTTGGA AAGCGCCACA GGCTGCAAGT GTGATCCACA CTGATTTCGA AAAAGGTTTT
ATCAAAGCTG AGGTGATCGC TTATTCGGAC TATGTAAAAT ATGGTTCAGA ATCAGCCTGC
CGCGATAACG GCCGTTTACG TATAGAAGGT AAAGAATACG TTGTGAGCGA TGGTGATGTA
ATGCACTTCC GTTTCAACGT TTAA
 
Protein sequence
MALQVGIVGL PNVGKSTLFN AVSNSAKAQA SNYRFCTIEP NVGLVDVPDE RLAKLEELVK 
PERVVPTTIE FVDIAGLVKG ASKGEGLGNK FLANIREVDA IVHVIRCFED ENILREEGAI
NPVGDKEIID TELQLKDLES VEKKIARTEK MAKTGGDPKA KVEFEILKRC QAHLEQGKNV
RELGLSKEER VAIADLFLLT EKPVLYVANV DEASMLTGNK FSVQLQESVK AENATVVVMN
NSIEAQISEM EDAADKELFL SEYNLTEPGL NRLIRSAYSL LNLITYFTAG VQEVRAWTIH
TGWKAPQAAS VIHTDFEKGF IKAEVIAYSD YVKYGSESAC RDNGRLRIEG KEYVVSDGDV
MHFRFNV