| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3714 |
|---|
| Symbol | |
|---|
| ID | 8359882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4662791 |
|---|
| End bp | 4668106 |
|---|
| Gene Length | 5316 bp |
|---|
| Protein Length | 1771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965883 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003123377 |
|---|
| Protein GI | 256422724 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4099] Predicted peptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.333758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0659323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATT TGTACACTAT TGCTATGTTC AGAAAGTTAG CTGCCTGCCT TGCAGTTACG
CTGTTCACAA CTCTAACAGT CGCCGCACAA CAAACTGCGG TATCCTTAGC CGGAACAAAG
GTTACAAACT CCGGCGGTTA TTATGAATAT GTTCCACCAT CCTATGCTGC CAGTAAGGAT
TCTTTTCCTT TACTGATCTT TATTCATGGG ATAGGAGAAC TGGGTAACGG TACAAGCAAC
CTGCCCGCGG TACTCAGAAA TGGCGTACCT AAACTTATTG ATAAAGGACT GTTTCCCGCC
TCTTTCAAAG TAGGTGGTAA ATCGTTTTCA TTTATCGTTG CTTCCCCTCA GTTTAGGAAC
ATTCCCAGCC CGATGGACGT GCTGAGTCTT GTGAATTATC TGAAGGGTAA ATTCAGAATT
GATAGTAAAC GTATATATGT AACGGGATTG AGTATGGGTG GCGGCGCTAC GGAAGATTTC
GCGAGCGCTA ATGATTCCTA TGCACAGATC CCTGCTGCCG TTGTAGCTGT TGCTGGTAAT
ATGAATCCGC TGCAGATCAC CAATGCACCA AAAGTAATGG CGAAGAACGA TGTGCCGGTA
TGGTTCCTGC ATAACGAGAA TGACCCGGTT GTTCCTTCCC AGTACTCAAA GGACTGGACC
TCTATGATGG ATTCCTACAA ACCCAGTCCT ACGCCTCAGC CTAAACTCAC CATTTTCAAC
GCTTCCGGTC ACGACGCCTG GTCCAAGGCC TATGATCCTT CTTATAAAGA AGATGGCCTG
AACGTCTACG AATGGATGCT CCAATACGAG AAAGGCGGAA AGGTATCAAC GCCTTCCAAA
CCGAACCCGG GCAATAAGAG AGTCAATGCC AAACCCAACA TCGGTAATGG TATGTACTAC
CCGGATGCGA TGACCGCATT TGGTCTGACG CCTGGTGATA CACTCTGTAT TCCTGCGGGT
GATTACGAGT TTATTCAGCT CGGTAGTCTG GTAGGTACGG CTGCTAAACC GATTGTGATC
ACCAACTGCG GCGGTGTGGT AAGAACAGGT ATCAGAACGC TGAAAACGGA TGTGTCTTTC
AATATCATGG GCGGCAAGTT CCTGCACATT ACGGGTTCCG GTACGCCTGG GGTAGAGTAT
GGTTTTGATA TCAATGGCCG CAACCTGCTC GGTATAAAAA TGCAGGGTAT TTATCTTGGT
TCGGGTAGTT CTGACATCGA TATACATAAC TTCTACGTGC ATGACGTAGG CTCCTTCATG
GTCGCGAAAA CCACACAGGA ATGTACTAAT CCACAGTTCT GGGAAGGCAA ATATGTCATG
AAGAATGTAA AGATCCACCA TATCAAAGGC CGTTATTCCG ATTACGAAGG TTTCTATATC
GGTAACACGC ATTATGTGAT GGATTACCTG CTTTGTCAGG GTATCAAATC TCACCATATT
CAGGACCTGG AAGTGTATGA CAACGATCTG CAGTACATGG GCCAGGATGG CATCCAGATC
TCTATGTGTG ACCTGGGTGA AAATAAGATC CACCACAATA TCGTACGCAA CTATGGTACC
ACCAAACTGG ACGCACAGAG CTATGGTATG CTGATGGGTG GCGGTTCCCG TGTGAAACTG
TACAACAACG TGGTTGACAA CGGTTATCTG CCGGGTATCG CATTGTTTGG TTCCGGTATC
TCCTATGTAT ACAATAACGT TATCTCCAAC GTTGAAAACG GGGAAGGTAT CAACGTATCA
GATAAACTGA TACTGGAGCC TGTAACCGGT TATATCTACA ATAACACGAT CTACAACACC
GGCAATACCG GTATTAAAAT ATACGCTTAC CTGACCACCA TCGGTCACAA AGTATACAAC
AACCTTGTGA TCGAAAAGGC TGCAGGTGGT AGTTATCCAA CGGATGGTCT TTATATCAGA
GGTGCACAGA ATATCAAGTT TGACTACGGT AACAATATGT TCTCTACTAC TGCCAATGCA
GGTAAAGTGG TGACCAATGT CAATGGCGCT GATTTTCACC TGACTACCGC ATCTACAGCT
GTAGATGCGG GTAAGAGTGT GGCAGACCTC GGACTGATCA CTGATATGGA CGATCTGAAA
CGTCCGGTGA ATAGCGGGTA TGATGTGGGC GCCTATGAAT ATCAGTTACC AAAAGCTCCT
TCTACCGGTA ATGTTAAACC TACAGCCAAC GCAGGCAAAG ACCTTACGAT TACATTACCT
ACCAATACTG TCACGCTGGA TGGTACCGGT TCTACCGATA CCGACGGTAA AATCAGCAAA
TATCTCTGGA CAAAACAAAG CGGTCCTGCT GGTGGTACTA TCACCAACAA TGCGACTGCA
AGCACCAGTG TGACCGGTCT GACAGCGGGT ACTTACATCT TCACCCTGAC GGTGACTGAT
GATAAGTCGG CAACTGATAT TGACAGCGTA ACAGTGAAAG TTAATGCAGC TGCAGCGAAC
AAGCCTCCGG TATCTAATCC GGGCAGCGCG GTTATCATCA CACTGCCAAC CAATACAGTG
ACACTGGATG GTGCTGGTTC TGCTGATGGC GATGGTAAGA TCAATAAATA TGAATGGAAG
AAAGTAAGCG GCCCTGCTGC TGGTACAATC ACTACGCCGG CGGCTGTGAA GACCACTATT
ACGGGTCTGA CAGCAGGTGC ATATGTCTTC TCGCTGACAG TAACAGATGA TAAACAGTCT
GCCAATACAT CAACTGTAAG TGTAACGGTG AATCCTGCCG CTAACAAAGC GCCGGTTGCG
AATGCCGGTA AGGCAGTGAA CATTACCTTG CCAACAAACA ATGCAACGCT GGATGGCAGT
GCTTCCAGTG ATACTGATGG TAAGATCAGT AAATATGAAT GGAAGAAAGT AAGCGGTCCT
GCGACCGGAA CGATCACTAC ACCGGCAGCT GTTAAGACGA CTATTACTGG TCTGACCGCA
GGTACCTATG TATTCTCGCT GACCGTAACG GATGACAAAC AGACTTCCAA TACTGCGACA
GTAACAGTAA CTGTAAATCC TGCCACTAAT AAATTACCTG TAGCGGTTCC GGGCAATGCG
CAGACTATTA CCCTGCCAAC CAACAGTGTA ACAGTAGATG GTCAGGCTTC TTACGACCCT
GATGGTAAGA TCACCAAATA CCTGTGGCAG CGCATGAGCG GTCCGAATGA TGTGACGTTC
AGTAATGCGT CAGCTGCGAA GACGACCATC TCCGGTATGA TCGCAGGTAC TTATGTATTC
TCGCTGAGTG TGGCAGATGA CGATGGTGCT GTTGCTGCTG CGAATATCAC CATTACTGTA
AATCCAGCTG CTAATAAAGC GCCTGTAGCA AATGCAGGCA GCGCACAGAC GATCACCCTG
CCGACCAATG TGGTCACCCT GGACGGTAAA GCTTCCAGTG ATGCAGATGG ATCTATCAGC
AAATATGAAT GGAAGAAAGT AAGTGGTCCT GCAAGTGGTA CAATTGCGAC GCCTGCTACT
GTGAAGACAG CTATTACCGG ACTGACAGCT GGTACTTATG TATTCTCACT GACAGTAACT
GACAACAGGC AGGCAACCAG CACAGCGAAT GTGACGGTGA AAGTAAATCC TGCGCCAAAT
AAAGCGCCTG TAGCCAATGC AGGTAGCGCA CAGACGATCA CCCTGCCAAC CAATACGGTG
ACCCTGGATG GTAAAGCTTC CAGTGATGCA GATGGCTCCA TTGCTAAATA CGAATGGAAG
AAAGTAAGCG GCCCTGCGAC AGGTACGATT GCGACGCCGG CTACTGTGAA AACAGCGATT
ACCGGATTGA CAGCGGGCAC TTATGTCTTC TCATTGACTG TAACTGATAA CAGCGGTGCT
GTTGCTACGT CAAACGTAAC CGTGACAGTC AACCCTGCGC CAAATAAAGC GCCTGTTGCG
AATGCAGGCA GTGCAGTAAC TATCACATTG CCAACCAGCA CTGTCACCCT GGATGGTAAG
GCTTCCAGCG ATGCAGATGG CTCGATTGCC AAATATGCCT GGAAGAAAGT AAGCGGTCCG
AACGGCGGTG CTATTACAAC ACCTGCTGCT GTGAAAACTA CAATCACAGG TCTTACAGCA
GGTACTTATG TATATGCGCT GACAGTAACT GATAATGACG GTGCATCTGC TACTGCAAAT
GTGACCATCA CTGTGAAAGC GGCTCCGGCA GCCAATAAGA AACCTATAGC AAATGCAGGT
CCGGATGTAA CCATCACACT GCCTGAAAAC TCCGCACTGC TGGATGGCTC CCTGTCAATG
GATCCTGATG GTAAGATTGC GAAATACGAA TGGTATAAAA TAAGTGGTCC GAATGGTGGT
ACCATCAAAG TGAAAGATGC AGCTATCACT AATGCACAGT TACTGATTGA AGGTACTTAT
CTGTTGGCCC TGCAGGTAAC AGACAACTCC GGCGCAACAG ATATCGATAC CATGAAACTG
GTAGTAAAGG CAGCGCCACC TGCGGTAAAT GCTCCGCCGG TAGCAAGAGC AGGAAACGAT
ATCACGGTAA GACTGCCGGT AAATAGTGTG ATCCTGAATG GTGCAGCCTC TTCTGATCCT
GATGGTATTG TAACCAACTA CCAGTGGCTG AAGATCTCCG GTAAAGATGT ACACTTCTCG
AATGCAACAG GTATTATCAA CGTAGTATCT GGTCTGACGC CAGGTACATA TGTGATCGAA
CTGCAGGTAA CCGATAATAA GAATGCCAAA GCCAGTGACA GACTCACCAT CACGGTGCTG
GCAGCTGAAA ACAGCGATGG TAAGCCACCT GTTGTGCTGA CGCAAGGTGA CCTGACCCTC
AGATTGCCAA ATGCAAGTAT GAAGGCGGAT GGCAGCAGGT CTTATGCGAA TGGCACTAAT
ATCAGCAGCT ACGCATGGAA ACAGGTGTAT GGTCCGCTGC AGGCAACAAT CGCAGCACCA
TCTGCTAAAG CAACGGATAT CTCCGGTATG AACTTCCCGG GTAGCTATGT ATTCGAACTG
ACGGTGACAG ATGATAAGAA ACAGAGCAGC CGTGCTACCT TCGAAGTGAC TGTACTCGAA
CCAGGTGGAG ATGCTTTTGT TCCTGAAATC ACGACATATC CGAATCCGGT TGTTACCGCG
CTTACCTTCA AACAGCGTAT GAAGAACTCC AGTCAGGGTA CGATTACGAT CTTCAACATA
GCCGGTAAAG CGATGAAGAG CTACAACCTG CCAGCCGGAG AGAACATACA GCAAACCCTT
GATGTGTCTA CGCTGCCGAT CGGTACTTAC ATACTGCAGG TGATATACAA AAACAACAAT
TACAAGTGGA GCACCAAGTT TGTAAAGAGC GAATAA
|
|---|
| Protein sequence | MKHLYTIAMF RKLAACLAVT LFTTLTVAAQ QTAVSLAGTK VTNSGGYYEY VPPSYAASKD
SFPLLIFIHG IGELGNGTSN LPAVLRNGVP KLIDKGLFPA SFKVGGKSFS FIVASPQFRN
IPSPMDVLSL VNYLKGKFRI DSKRIYVTGL SMGGGATEDF ASANDSYAQI PAAVVAVAGN
MNPLQITNAP KVMAKNDVPV WFLHNENDPV VPSQYSKDWT SMMDSYKPSP TPQPKLTIFN
ASGHDAWSKA YDPSYKEDGL NVYEWMLQYE KGGKVSTPSK PNPGNKRVNA KPNIGNGMYY
PDAMTAFGLT PGDTLCIPAG DYEFIQLGSL VGTAAKPIVI TNCGGVVRTG IRTLKTDVSF
NIMGGKFLHI TGSGTPGVEY GFDINGRNLL GIKMQGIYLG SGSSDIDIHN FYVHDVGSFM
VAKTTQECTN PQFWEGKYVM KNVKIHHIKG RYSDYEGFYI GNTHYVMDYL LCQGIKSHHI
QDLEVYDNDL QYMGQDGIQI SMCDLGENKI HHNIVRNYGT TKLDAQSYGM LMGGGSRVKL
YNNVVDNGYL PGIALFGSGI SYVYNNVISN VENGEGINVS DKLILEPVTG YIYNNTIYNT
GNTGIKIYAY LTTIGHKVYN NLVIEKAAGG SYPTDGLYIR GAQNIKFDYG NNMFSTTANA
GKVVTNVNGA DFHLTTASTA VDAGKSVADL GLITDMDDLK RPVNSGYDVG AYEYQLPKAP
STGNVKPTAN AGKDLTITLP TNTVTLDGTG STDTDGKISK YLWTKQSGPA GGTITNNATA
STSVTGLTAG TYIFTLTVTD DKSATDIDSV TVKVNAAAAN KPPVSNPGSA VIITLPTNTV
TLDGAGSADG DGKINKYEWK KVSGPAAGTI TTPAAVKTTI TGLTAGAYVF SLTVTDDKQS
ANTSTVSVTV NPAANKAPVA NAGKAVNITL PTNNATLDGS ASSDTDGKIS KYEWKKVSGP
ATGTITTPAA VKTTITGLTA GTYVFSLTVT DDKQTSNTAT VTVTVNPATN KLPVAVPGNA
QTITLPTNSV TVDGQASYDP DGKITKYLWQ RMSGPNDVTF SNASAAKTTI SGMIAGTYVF
SLSVADDDGA VAAANITITV NPAANKAPVA NAGSAQTITL PTNVVTLDGK ASSDADGSIS
KYEWKKVSGP ASGTIATPAT VKTAITGLTA GTYVFSLTVT DNRQATSTAN VTVKVNPAPN
KAPVANAGSA QTITLPTNTV TLDGKASSDA DGSIAKYEWK KVSGPATGTI ATPATVKTAI
TGLTAGTYVF SLTVTDNSGA VATSNVTVTV NPAPNKAPVA NAGSAVTITL PTSTVTLDGK
ASSDADGSIA KYAWKKVSGP NGGAITTPAA VKTTITGLTA GTYVYALTVT DNDGASATAN
VTITVKAAPA ANKKPIANAG PDVTITLPEN SALLDGSLSM DPDGKIAKYE WYKISGPNGG
TIKVKDAAIT NAQLLIEGTY LLALQVTDNS GATDIDTMKL VVKAAPPAVN APPVARAGND
ITVRLPVNSV ILNGAASSDP DGIVTNYQWL KISGKDVHFS NATGIINVVS GLTPGTYVIE
LQVTDNKNAK ASDRLTITVL AAENSDGKPP VVLTQGDLTL RLPNASMKAD GSRSYANGTN
ISSYAWKQVY GPLQATIAAP SAKATDISGM NFPGSYVFEL TVTDDKKQSS RATFEVTVLE
PGGDAFVPEI TTYPNPVVTA LTFKQRMKNS SQGTITIFNI AGKAMKSYNL PAGENIQQTL
DVSTLPIGTY ILQVIYKNNN YKWSTKFVKS E
|
|---|
| |