Gene Cpin_3709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3709 
Symbol 
ID8359877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4656150 
End bp4657073 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content45% 
IMG OID644965878 
Productglycosyl transferase family 2 
Protein accessionYP_003123372 
Protein GI256422719 
COG category[R] General function prediction only 
COG ID[COG1216] Predicted glycosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.530664 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0910127 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAGG AAAATAACAT AGCACCGCTG GTTTCCATCG TAACGGTCAA CTATAATACC 
ACCGCCGTTA CCTGTGAATT GTTGCATTCC ATCAACGGCA ACAGTTACCG CAATGTGGAA
GTGATCGTCG TGGATAATGC ATCCAAGGAA GATCCTACTG CCGCACTGCA GGCTGCATAT
CCTGCTGTTA AAGTGATCAG AAGTGCGACC AATAAAGGAT TTGCCGGTGG TAATAACCTC
GGTATCGTAG CCGCTACCGG CGAGTATATC TTCCTGGTGA ATAACGACAC CGAATTCACA
GATGGCCTGA TAGAAGGTCT GCAGGAAGTA TTTCAGTCCC ATCCCGACGC AGGTATGGTA
AGCCCCAAAT TTCACTACTA CTTTCATAAA GGTACGATCG AATATGCCGG CTATCAGTCA
GTAGATGTAT TCACCGGCCG TAACAGCATG ATCGGCTGTA AAGAAGCCGA TCAGGGCCAG
TACGATCAGC TCTCTGCAAC CAACTACGCA CATGGTGGCG GTATGATGAC CACTGCTGCC
GTACTGAAAG AAGTGGGCCT CATGCCGGAA GTCTATTTCC TCTACTACGA AGAATTTGAC
TGGTGCGAGC AGTTTAAACG CAAAGGCTAT AAAATCTACT ACCAGTATAA GTCACTTATC
TATCATAAAG AATCAATGTC CACCGGTAAG AACAGTCCAT TAAAGACCTA TTACCTCACC
AGGAACAGAA TCCTGTTCAT GCGTAGAAAT GTGGCATTAC CGAACCGAAT CATCTTTTTA
CTGTACCTGA CCTTGTTTAC CATTCCGAAG AATACGTTAC AATTCCTGCT CAAACGGGAG
AAGGAACACT TAAAGGCTTT CTGGAAAGGC ATTATGTGGA ACGTAAAACA TCGTCAATTA
AATCTAATAC CATGTGTGGG ATAG
 
Protein sequence
MSQENNIAPL VSIVTVNYNT TAVTCELLHS INGNSYRNVE VIVVDNASKE DPTAALQAAY 
PAVKVIRSAT NKGFAGGNNL GIVAATGEYI FLVNNDTEFT DGLIEGLQEV FQSHPDAGMV
SPKFHYYFHK GTIEYAGYQS VDVFTGRNSM IGCKEADQGQ YDQLSATNYA HGGGMMTTAA
VLKEVGLMPE VYFLYYEEFD WCEQFKRKGY KIYYQYKSLI YHKESMSTGK NSPLKTYYLT
RNRILFMRRN VALPNRIIFL LYLTLFTIPK NTLQFLLKRE KEHLKAFWKG IMWNVKHRQL
NLIPCVG