| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3703 |
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| Symbol | |
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| ID | 8359871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4642036 |
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| End bp | 4644225 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644965872 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_003123366 |
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| Protein GI | 256422713 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000380193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.301221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATAA TATATTTCGT TAAAGCCCTG CTGAAAAAGA AATGGTGGAT CATCGTAAGT
ACCATCATCG CCATTGTTGC CGCGTTTGTT TTTACCCTCG GCAAACCCCG TATGTATGCC
TCAGTAACCC AGATAGCAAC CGGATTTACC GTTAATGACC AGGTGAAACT CCGTGACGAG
AATGTGAACA TATTTGAAGC AGACGTAAAA TTTGACAACG CGATCGAAAC CATCAACTCA
CCGGTGGTGA TCGGAATGCT GTCTTATAAC CTGTTACTCC ATGATCTGAC TACGACCAAA
CCATACGTAC AGCTTGAGGC GAACGACCTG AAATCAGAAG CCTATCGTAA GGTAGACAAA
CAGGCGGCAG TGACCATCCT GCGTAACAAG CTGGATTCAT TGCAGGTGCT CTCCTCTTAT
AACCCGGTAG AACGCGATAT CCTGGGATAT CTGAAACTAT ACGGATATGA CTACGAAGCC
ATCCGCAAAC ACCTGAATGC AGGTCGTGTA CAACGTACCG ATTACCTGGA GATCGTGTAT
ACTGCGGAAA ATCCTGAGCA GGCAGCTTAT ACTGTAAATA CCGTTTACCG CGAGTTTATC
CGCTATTACA GAAGCATGCG CTCAGAAAGA TCTGTTGAAA GTGTTGAATC TTTCGATCAG
CTGGCTGTTC AGAAGAAAGC CGAACTCGAT AAGAAAGTAG AAGCACTGCG TGCCTATAAA
GCATCTGAAG GACTGCTGAA CGTTGAAACA GCCAGTGGTA ACGAACTGGA CCTGATCAAA
CAGTTTGAAA AAGGACTGTC TGATGAACAG GCGAATTATA ATACCATTAC CTCTTCCCTG
GAAAGTGTAA ATGGTCGCCT TGCCAGTGCC AATGCGGGGA AAACTGTTTA TACCAATGCT
AACAGTGAGA TCATCGAATT ACGCAAACAG ATCAATGATC TGAATGACGA CCTGACTCAG
AAAGGAGGTA ATGATGATGC CATGCGCACT AAACTGGCTG GCCTTCGTTC CCAACTGCAA
AAGAAACTGG GCGCTGCTAC CTCCGGCACA CAGAGCGCTA CCACCAAAGA TGCGCTCATT
CAGGAGAAAG CCAACCTGGA AGCACAACAG AACGCTTCCC GGCTGAACAT GAAAAATCTC
CAGAGCCAGA TCTATAAACT AAGAGGTTCT GTAGGTTCCT ATGCCAATAA AGAAGCAACT
GTAAGTAGCT TACAGTCTGA AGTGGACATG GCACAGGAAG AGTACAATAA ACTCAAGGAA
AAACTGAATG CGGCACAGGA CAACCAGACT ACACCTGACC TGAACTTCAA ACAGGTACTG
AAAGGTCAGC CGGCATTTAA ACCGGAGTCT TCCAAACGCG TAATCATTAT GGGTATGGCA
GGTATTTCCG TATTCCTGCT GACGTCCTTT ATTGTATTGC TGCTGGAATT CCTGGACGGT
TCCCTGAAGT CTCCTTCCGT ATTTGAGAAA CACCTGGACC TTCGTCTGAT CAGCAGTGTC
AACCATGCTG ACCTCAATAA ATACAGCATC CTGGAAGTAT TACAGCGCAC CACGTTGCCT
GATAAAACAA CCAAACAACG TCAGAACACT TTCCGTGAAC TGCTGCGTAA ACTGCGCTAT
GAAGTAGAAA GCAGCGGTAA GAAGTCATTC CTTATCACGA GTACGGAATC CCGCCAGGGT
AAGACCACGC TGACACAGGC CCTTGCCTAC AGTTTAAGTC TGAGCAACAA GAATGTACTG
GTGATAGATA CCAACTTCTG TAACAACGAT ATCACGGTAC AGATGGAAGC TGCGCCAACA
CTGGAATCAT TCTCTGTACC GCCAACTGAG TTGAGTATAG ACAAGGTGAA GGAAATCGTA
ACAACCTATG CAGTATCTGG TATTGAAGTA ATCGGTTGTA AGGGTGGCGA CTATACCCCA
TCTGAAATAC TGCCGAAAAA TAATCTCTTA AATTACCTCC CCTTCCTCAC ACATCATTAT
GATTTCATAC TGCTGGAAGG CGCTCCGCTC AACGACTATA CCGACAGTAA AGAGCTGGCG
CAATACGTAG ATGGCGTAAT CGCTGTGTTT TCGTCCAAGT TGTCCCTTAC CCAGATAGAT
CGTGAATCCA CACAGTTTTT TGAGACACTT GGTGATAAAT TCGTGGGAGC CGTACTTAAT
AACGTACAGG AAGAATACCT CGAATTATAA
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| Protein sequence | MDIIYFVKAL LKKKWWIIVS TIIAIVAAFV FTLGKPRMYA SVTQIATGFT VNDQVKLRDE
NVNIFEADVK FDNAIETINS PVVIGMLSYN LLLHDLTTTK PYVQLEANDL KSEAYRKVDK
QAAVTILRNK LDSLQVLSSY NPVERDILGY LKLYGYDYEA IRKHLNAGRV QRTDYLEIVY
TAENPEQAAY TVNTVYREFI RYYRSMRSER SVESVESFDQ LAVQKKAELD KKVEALRAYK
ASEGLLNVET ASGNELDLIK QFEKGLSDEQ ANYNTITSSL ESVNGRLASA NAGKTVYTNA
NSEIIELRKQ INDLNDDLTQ KGGNDDAMRT KLAGLRSQLQ KKLGAATSGT QSATTKDALI
QEKANLEAQQ NASRLNMKNL QSQIYKLRGS VGSYANKEAT VSSLQSEVDM AQEEYNKLKE
KLNAAQDNQT TPDLNFKQVL KGQPAFKPES SKRVIIMGMA GISVFLLTSF IVLLLEFLDG
SLKSPSVFEK HLDLRLISSV NHADLNKYSI LEVLQRTTLP DKTTKQRQNT FRELLRKLRY
EVESSGKKSF LITSTESRQG KTTLTQALAY SLSLSNKNVL VIDTNFCNND ITVQMEAAPT
LESFSVPPTE LSIDKVKEIV TTYAVSGIEV IGCKGGDYTP SEILPKNNLL NYLPFLTHHY
DFILLEGAPL NDYTDSKELA QYVDGVIAVF SSKLSLTQID RESTQFFETL GDKFVGAVLN
NVQEEYLEL
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