| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3666 |
|---|
| Symbol | |
|---|
| ID | 8359833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4601911 |
|---|
| End bp | 4602726 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965835 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_003123329 |
|---|
| Protein GI | 256422676 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.4902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.035512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAGA TGCATACATA CACAGACCAG CTGGGGCGGG AAGTGGGAAT ACCCTTCCCG
CCTCGTCGTA TTATATCGGT GGTGCCTTCG CAGACGGAAC TGTTGTATGA CCTCGGACTG
GAAAAGGAGG TGGTGGGTAT CACAAAATTC TGTGTACATC CGGAGCAATG GTTCCGGAAA
AAGCAGCGGA TTGGCGGTAC CAAACAGCTG CATCTGGACG AAATCCTGGC GCTCAAACCT
GACCTGGTGA TTGCCAATAA GGAGGAAAAT ACGGCCGCTG ATATTCAATA CCTCATGGAA
CGGGTACCCG TCTGGGTCAG CGATATTCAT ACCCTGGAGG ATGCACTGAA GATGATAGCA
CAGGTAGGAG AAATCACCGG AAGACATGAA CAGGCTTTGC AAATAACGAA TGATATCACA
CTCAGATTCA GCGATTTACA GAAAATTTTA CATTCGGGCC ACAAACTGCG GACGGCCTAT
TTTATCTGGC GGGATCCCTG GATGGTTGCC GGAGGAGATA CCTTTATACA TCATATGATG
ACGGATTATT GCGGATTGGA AAATGTATTT GGGGGAAGTG CGCGGTATCC TGAAGTGGAT
GCCGGAAAAA TATTATCATC CGATTGTCAG GTGATATTAT TGTCATCGGA GCCCTATCCT
TTTAAAGAGA AACATATGGC GGAACTGGCA GCGATAGCGC CGGGGGCACG TATCCAGCTG
GTGGATGGAG AAATGTTTTC CTGGTACGGC AGCCGGCTGG GAAAAGCCGC AGGATATCTG
CAGGAATTAT GGAAACTATT GTATAATTGT CAATAA
|
|---|
| Protein sequence | MQEMHTYTDQ LGREVGIPFP PRRIISVVPS QTELLYDLGL EKEVVGITKF CVHPEQWFRK
KQRIGGTKQL HLDEILALKP DLVIANKEEN TAADIQYLME RVPVWVSDIH TLEDALKMIA
QVGEITGRHE QALQITNDIT LRFSDLQKIL HSGHKLRTAY FIWRDPWMVA GGDTFIHHMM
TDYCGLENVF GGSARYPEVD AGKILSSDCQ VILLSSEPYP FKEKHMAELA AIAPGARIQL
VDGEMFSWYG SRLGKAAGYL QELWKLLYNC Q
|
|---|
| |