| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3651 |
|---|
| Symbol | |
|---|
| ID | 8359818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4584420 |
|---|
| End bp | 4586261 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965820 |
|---|
| Product | glycoside hydrolase family 76 |
|---|
| Protein accession | YP_003123314 |
|---|
| Protein GI | 256422661 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4833] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0120555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.316407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAC TTCTACAAGT GGCCGTACTG TTGCTGTGTA TGCAGTTCAG TTCATTCGGC
CAGCTCGCTA ATTTCAATTC CACGGCTGAG GCCCTGCAAA CAAGTATGTA CAACACTTTT
GGTACCCCTA ACAACAACTA CTGGTGGTGC GCCAATGGTG TACATGCGTT ACTGGACGGT
TATACCCGTA CCCGTTCCGA AACTTACAAG ACACGTATGA AAGCCCTTTT ACTGAACACA
AAGGCATCAA ATGGCAACAC CTACATCAAT TATTTCTATG ATGACATGGA TTGGATGGGT
ATTGCTACAC TACGCGCCTG GGATGAAACC GGCGACGTGG ATTATTACAA TGTGGCCAGT
CAGCTGTGGA CCGACATCAA GGGCGGTTTC AGTAATGGCG CGATCGACTG GAACAAAGGC
TGTGTCGGTT GTAAGAATTC CTGTGCCAAT GCACCTGCCA TCATCCTGGG TGCAAGGATG
TACCGGATTA ACAATTCAGC AACTGATCTG CAGCTGATCA AGGACATTTT CACTTTTATG
AAGGCTAACC TGGTAGACCC GACTACCGGC GCTGTATGGG ATAATATCAA CCTGAGCACC
GGCGTTACCA ACAAGGATTG GATCTTCTCT TACAACGTAG GTACATTCAT CGGCGCAGGC
TGGGAGCTGT ACAAGATTAC CGGCGATACT TACTATCTGA ATGAAGCAGT AAAAACAGCA
GATTATGCCA TGAATTCCAG ACGTACCAAT GGTATGTTTT TCGCGAACGA AACCGGTAAT
GGTGATGGTG GATTATTCAA AGGCATCTTC ATGCGTTATC TCACAGAACT GGCAAGAGAA
GGTAACATTT CTGCCACTAA GCGGGCGGCC TATAATGAGG CGATCCGCTT CAATGCACAG
ACACTGAAAA CGAATGGTAT CAATCCTTCT ACCAACCTGG TAGGCGCTAA CTGGTCACAA
CAGCCATCAG GTTCTACCGA TTATGCTACA CAGCTGAGCG GTGTGATGCT GATTGAAGCA
GCAGCCTTAC TGGATCAGTC TTTCTTCTTT AAAGATGTCA ACTATGGCGG CAGTTACTGG
GGATTGAGCG TTGGTAGTTA CAATACGGCT GCACTGGTGG CAAAAGGTAT TGCCAACAAT
GATGTCACCG CTTTTGCAAT CCCTGCAGGT TATCAGGCGA CCCTTTACAA GAATGATAAC
TTCACCGGTG GCAGTCTGGT AGTGACAGGC AACAGCGCCT GGATTGGCGC TCCCTGGAAT
GATAGTACCT CTTCTATTAT CATCAGCTAT ACCGCAGGTG CATCTTTCTT CAAAGACTGT
AATTACACTG GTGCAGTGGT GAGTTTGCCG GCAGGTGACT ATACCCTTGC GCAGCTACAG
GCCATTGGTA TTCTGAATGA TGATATCTCT TCTTTCCGTG TCAGCAGTGG TTACCAGGTG
ATCCTTTATG AGAACGACAA CTTTGCTGGT ACATCTGTCA CAGCGACTGC TGATAACAGT
TGTCTGGTGG CACAGAACTT CAATGATAAA GCCACTTCAA TCCGTATTAC CGCTACAGGT
GCAGCACCGG CAGCGGTGAC TACAGCAAGG GTGAATACGA TCGAAAAAAG CCTGCTGAAA
GGCGTGACCT TATATCCTAA CCCTGCAGGT AATACGTTGT ACCTGAAGTC AGGTGCGGAC
CTGCTGGGTG CAGACGTAAC GGTAGTGGAT ATGTCGGGAA GGGTCGTTCT CCGCAATCGC
CTGACAGCCA ACAATCTGAA CGTATCGCGT TTAGGCAGCG GCGTATATTG GATCACGATT
GTGAAAGATG GTAAAAAAAG TACAATTTCT TTCGTGAAAT AA
|
|---|
| Protein sequence | MKSLLQVAVL LLCMQFSSFG QLANFNSTAE ALQTSMYNTF GTPNNNYWWC ANGVHALLDG
YTRTRSETYK TRMKALLLNT KASNGNTYIN YFYDDMDWMG IATLRAWDET GDVDYYNVAS
QLWTDIKGGF SNGAIDWNKG CVGCKNSCAN APAIILGARM YRINNSATDL QLIKDIFTFM
KANLVDPTTG AVWDNINLST GVTNKDWIFS YNVGTFIGAG WELYKITGDT YYLNEAVKTA
DYAMNSRRTN GMFFANETGN GDGGLFKGIF MRYLTELARE GNISATKRAA YNEAIRFNAQ
TLKTNGINPS TNLVGANWSQ QPSGSTDYAT QLSGVMLIEA AALLDQSFFF KDVNYGGSYW
GLSVGSYNTA ALVAKGIANN DVTAFAIPAG YQATLYKNDN FTGGSLVVTG NSAWIGAPWN
DSTSSIIISY TAGASFFKDC NYTGAVVSLP AGDYTLAQLQ AIGILNDDIS SFRVSSGYQV
ILYENDNFAG TSVTATADNS CLVAQNFNDK ATSIRITATG AAPAAVTTAR VNTIEKSLLK
GVTLYPNPAG NTLYLKSGAD LLGADVTVVD MSGRVVLRNR LTANNLNVSR LGSGVYWITI
VKDGKKSTIS FVK
|
|---|
| |