| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3610 |
|---|
| Symbol | |
|---|
| ID | 8359777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4501615 |
|---|
| End bp | 4503984 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965779 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003123273 |
|---|
| Protein GI | 256422620 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.251487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.000460877 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAGAA ACTATATCAA AATTGCCTGG CGCAGTTTGA CCAGGACCAA ACGTTTTTCT
ATTATCAATA TCTCCGGATT AGCCATTGGC ATGGCTGGTG CCGCATTGAT CCTGTTATGG
ATACAGCATG AGTTTAGTTT TGACCGCTTT CATGAAAACA GGGACAGACT GTATGAGGTG
TATGGACTAG CGACTGCCGA TCATAAAACG ATCGCTATCA ATCAGACGGA ACAGCCCCTC
GGACCTGCCC TGAAGAAAGA CTATCCTGAA ATTCAAAATA CCGCCCGTGT GGCAGCCGTA
AGCAGTTTGT TGCTATCGGC AGGAACAGCG CCATTCACCG GCATTAAAGG CGCTTTTACG
GACAGTAGTT TCTTTAGCCT GTTCAGCTTT CCGGTATTGG AGGGATCCTC ACGGCAGCTG
CTTACCGCGA GTCATGAAAT CGTTATTACG GCACGTCTGG CACAAAAGCT CTTTGGGAAA
GAACCTGCGC TGAATAAGAT GATTAAAATC GACTCGGTGG ACTATTTCCG TGTAGCAGCC
GTACTGAAAG ACCTGCCTTC CAATACCCGG TTTGATATAG ATTATCTGCT GCCCTGGACT
TATCTTAATA AGATCGGCTG GGGTAATGAC AGCTGGTTAA GTAACAACAT TTCTACCTTC
GTATTGCTGC AGCCAAATAC AAATGCGGCG GTTGTAGAAG GAAAGATAAA AGATATTGCC
CGACACTATT CCGGTCGCAA CGACATCTGG ACACATTTTC TCTTTCCCCT CGACAAGTGG
CGTTTGTACA GTGTTTTTGA AGATGGACGG GCTACCGGCG GACGTATTGC CATTGTCCGT
TTATTCGGTA TTGTAGCCAT CATGATCCTG TTAATCGCCT GTATCAACTT TGTGAACCTG
AGTACTGCAA AAAGTGAGCG CAGGGCAAGA GAGGTCGGCA TCAGGAAAGT AGCAGGCGCC
GGAAAGGGCC TTTTATTTGG CCAGTTCATG ACAGAAGCAC TATTGACGGC CCTGATTGCC
GGATGCCTGG CGATGTTGCT GGTGGAAGGC GCTTTACCCT ATTTTAATCT GTTGATCGAT
ACCTCGCTTG CGATCCCTTA TACAAACATC ATTTTCTGGC TGTGTGCTGT CGCATTTATA
CTGCTTACCG GTTTACTGGC CGGATGCTAC CCTGCGTTTT ATCTCTCGGC ATTTAAACCG
GTAAGTGTGT TAAAAGGCGG TTTTAAAAAG CGGGAAGGAG CTATATCACC CAGAAAAACA
CTGGTGGTGT TTCAGTTTAC ATTTGCTGTA GTGCTGATTA TCTGTACCGT AGTGATAAGG
AACCAGATCC GGTATGTGCA GGAGAGAAGT ACAGGGTATG TCAGACAACA GCTCATCAAT
GTAGACTTCT CCGGAGATAT AGAAAAGCAA TATCCCCTGA TCAAACAGGA GTTACTTTCA
TCCGGTACCG CGGTAGCAGT TACCAAAACA ATGTCGGCCA TTACACAACG GGCGGCTAAT
ACCTGGGGAT TGATCTGGGA GGGTAAACCG GCCAGTTTTG ATGAAGCCAT TGCCTTATAC
AGCAGTGATG CTGATCTGGT CAAGACGGCC GGATTGCAGT TGGTTGCTGG CAGGGACATT
GATATTCAAC GGTATCCTGC GGATAGTTTT TCCGTTGTAC TGAATGAAAC GGCCGTTAAG
ACAATGGGAT TCAAAGATCC GCTCGGACAG GTACTCCGTG AAAAAGAAGG CAGCAGGACC
TGGCGTGTTG TTGGCGTTGT AAAAGATTAT GTTGTTGGAT CTTCCTATGA AAGGATACCT
CCGGTAGTGA TCCAGGGCCC TGGCAGTTGG TTCAATACCT TGCATATCCG TTTTGAGGCT
GCTAACTCCC TGTCGGTTAA TCTCCAGAAA GCAGAAGTGA TCTTTAAAAA ATACAATCCT
GCCTATCCCT TTAATTATCA GTTTGCGGAC CAGCAATATG CGCAGAAGTT TGATGGGGAG
GAACGGACGA AGAAACTGGC AGGCTTATTT GCTATACTGG CCATTTTTAT CTCCTGTCTC
GGACTGTTGG GGCTTTCTGC CTATGTAGCA GAAACGAGGA TAAAAGAGAT CGGCGTACGT
AAAGCGTTGG GTGCGTCTGT ACTCAGTATT ACGCATTTAC TCACGGCTGA TTTTCTTAAA
CTGGTAATGG TTGCTATTGT TATTGCGACT CTGCTTGCCT GGTGGCTGAT GAGTGTATGG
CTGGATGAAT TTGCCTACCG GATGACGATC AGCTGGTCTG TATTTGCTTT TTCAGGGTTG
CTGGCTATTG CGATCGCGCT GCTGACCGTT AGTGTTGAAG TCGTAAAAGC GGCCCTTATG
AGCCCCATAA AGAGCCTGAA AGCAGAATAG
|
|---|
| Protein sequence | MLRNYIKIAW RSLTRTKRFS IINISGLAIG MAGAALILLW IQHEFSFDRF HENRDRLYEV
YGLATADHKT IAINQTEQPL GPALKKDYPE IQNTARVAAV SSLLLSAGTA PFTGIKGAFT
DSSFFSLFSF PVLEGSSRQL LTASHEIVIT ARLAQKLFGK EPALNKMIKI DSVDYFRVAA
VLKDLPSNTR FDIDYLLPWT YLNKIGWGND SWLSNNISTF VLLQPNTNAA VVEGKIKDIA
RHYSGRNDIW THFLFPLDKW RLYSVFEDGR ATGGRIAIVR LFGIVAIMIL LIACINFVNL
STAKSERRAR EVGIRKVAGA GKGLLFGQFM TEALLTALIA GCLAMLLVEG ALPYFNLLID
TSLAIPYTNI IFWLCAVAFI LLTGLLAGCY PAFYLSAFKP VSVLKGGFKK REGAISPRKT
LVVFQFTFAV VLIICTVVIR NQIRYVQERS TGYVRQQLIN VDFSGDIEKQ YPLIKQELLS
SGTAVAVTKT MSAITQRAAN TWGLIWEGKP ASFDEAIALY SSDADLVKTA GLQLVAGRDI
DIQRYPADSF SVVLNETAVK TMGFKDPLGQ VLREKEGSRT WRVVGVVKDY VVGSSYERIP
PVVIQGPGSW FNTLHIRFEA ANSLSVNLQK AEVIFKKYNP AYPFNYQFAD QQYAQKFDGE
ERTKKLAGLF AILAIFISCL GLLGLSAYVA ETRIKEIGVR KALGASVLSI THLLTADFLK
LVMVAIVIAT LLAWWLMSVW LDEFAYRMTI SWSVFAFSGL LAIAIALLTV SVEVVKAALM
SPIKSLKAE
|
|---|
| |