Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3577 |
Symbol | |
ID | 8359744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4458049 |
End bp | 4459467 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644965747 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_003123241 |
Protein GI | 256422588 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000202901 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0451617 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAC AGATAAATAA ATATTTCTTA ATAGGTTTGT TGAGTGCCGG CCTACTGGAG GCATGTAAAG TGTCGAAGGA TACGCCGGCG CCTCAACCCG AGTTACCTGT TGCATTCAGA AACAGTGCAA CAGCTGATTC CACCACCATC GCAGATCTTC CATGGGAGAA CTTCTTTACA GATGCCACCC TGAAAACGCT GATCGATAAC GCTATCAAAA AGAATTATGA TATGCAGGCG GCCATCCTGA GTGTGGAGGC AGCCAGATTG CAAATGAGAC AGGCAAAACT GCTGAATCTC CCATCTGCAA AACTGAATGT TGTCGCCAGC ACCAGCCGTC CTTCTGATAA CAGTTTGAAT GGTATCAGTC TGAGTCAGTT CCTGGGTACC CAACACCTGG AAGACTACAG CGCTAATATC CAGTTTGCCT GGGAAGCTGA CATCTGGGGT AAGATCAAAA ATCAGAAGAA AGAAGCATTA GCCGCTTACC TGCAAACAGA AGAATCCCGT AAGCTGTTGC AAACAGATAT CGTAGCTACC GTATCAAAGG CATTCTATAA CCTGCTGATG CTGGATGAAC AGCTGGCAGT AGCGCAGAAT AACCTGAAAC TGAACGATAG CACCCTGCGC ATAATCCGCT TACAGTATGA CGCCGGACAG GTCACCCTGG TGGCAGTACA ACAGGCGGAA GCGCAACAGC TCACAGCTGC ACAGCTGATC CCGCAGATCG AACAGGACAT GACCGTACAG GAAAATGCCC TCCGTATCCT GTCAGGAGAA TTGCCTGCAG CAATAGAAAG ACACACCAAA CTGAATGAAT ATCCATTGAC AGATAAGCTG TCTGCCGGTA TTCCTTCTGA TCTGCTGAGC CGTCGCCCGG ATGTAAAAAG CAGCGAACTG GCCCTGAACA TTGCGAACGC AAGGGTAGGT GTAGCGAAGG CAAATATGTA TCCATCCCTG GTTATTACAG CCAGCGGTGG TCTGAATGCC GTAAAGTTCA GCGACTGGTT TCAGGTACCA ACTTCTCTCT TCGGACTGGC AACAGGCGCC ATCGCGCAAC CTTTGTTTGA CCGTAAAAAT CTGAAAACAC AATTTGAAGT GGCTAAGATA CAGAGAGAGC AATCCGTGCT CCGTTTCCGT CAGAACGTAC TGGAAGCGAC CGGAGAGGTG GCAGATGCAC TGGTGAAAAT AGAAAAGCTT AAATCGCAAT ATGACATCGC TTCTACCAAG GTGCAGACAC TCCATCAGGC TGTCAACAAT GCCAGCCAGC TGTTTGAAAG TGGCCGCGCC AGTTACCTGG AAGTGATCAT CGCGCAAAGT AATGTACTGC AGAGTGAACT GGAAGTCAGC AATCTCAGAA GAGATCAGCT GTACGCTGTA GTAGATCTTT ACCGTTCCCT CGGGGGCGGT TGGCGATAG
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Protein sequence | MKAQINKYFL IGLLSAGLLE ACKVSKDTPA PQPELPVAFR NSATADSTTI ADLPWENFFT DATLKTLIDN AIKKNYDMQA AILSVEAARL QMRQAKLLNL PSAKLNVVAS TSRPSDNSLN GISLSQFLGT QHLEDYSANI QFAWEADIWG KIKNQKKEAL AAYLQTEESR KLLQTDIVAT VSKAFYNLLM LDEQLAVAQN NLKLNDSTLR IIRLQYDAGQ VTLVAVQQAE AQQLTAAQLI PQIEQDMTVQ ENALRILSGE LPAAIERHTK LNEYPLTDKL SAGIPSDLLS RRPDVKSSEL ALNIANARVG VAKANMYPSL VITASGGLNA VKFSDWFQVP TSLFGLATGA IAQPLFDRKN LKTQFEVAKI QREQSVLRFR QNVLEATGEV ADALVKIEKL KSQYDIASTK VQTLHQAVNN ASQLFESGRA SYLEVIIAQS NVLQSELEVS NLRRDQLYAV VDLYRSLGGG WR
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