| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3555 |
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| Symbol | |
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| ID | 8359722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4431961 |
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| End bp | 4432557 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644965726 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003123220 |
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| Protein GI | 256422567 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0411582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0246778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATCCT CTCCGCTGAC CGATATATTG CTACATGACT GGCTGACTGG TGATGATTCG
CATTTCAGGC CCTTATTTGA GCATTATTTC CCCCGTTTGA AACGTTATGC TGCCGGCTTT
AGCGGAGACG CCGTAACAGG CGAAGAACTG GCTATGAACG TCCTCTTAAA GGTATGGCAA
CAGAAAGCGC GTATCAGCAC CGTGAAGGAT TTTGATAGTT ACCTGTTCAC GATGATGCGC
CATGAAGTGA TCAGCATGAT ACGGCAGCGG AAAACGATTA CAGATAGTTT TACTGAAAGC
ACAGCAGAAA CACCGGCGCC CGAAAACATC AATGATACCA TCAGTTACCG CGAACTATTA
CGCCGTTACC GGCAGTGCCT GGACAAGCTC CCTCCCCGCC GCCGTGAAGC ATTTATCCTG
AACCGTGAGA AAGGCATGAG CTATGCGGAA ATAGCCGCCG CACTCAACGT ATCTATCTTC
ACCGTACAAA ATCACATCGC CTCTTCCCTG AAATTCATGC GCGCAGAACT GGATGATTAT
GCCGATTTTC TGCCCGTACT ACTCCTCCTC GCCGTGCCAA TGTTAACTGT ATATTAA
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| Protein sequence | MASSPLTDIL LHDWLTGDDS HFRPLFEHYF PRLKRYAAGF SGDAVTGEEL AMNVLLKVWQ
QKARISTVKD FDSYLFTMMR HEVISMIRQR KTITDSFTES TAETPAPENI NDTISYRELL
RRYRQCLDKL PPRRREAFIL NREKGMSYAE IAAALNVSIF TVQNHIASSL KFMRAELDDY
ADFLPVLLLL AVPMLTVY
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