Gene Cpin_3478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3478 
Symbol 
ID8359644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4343036 
End bp4343503 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content44% 
IMG OID644965651 
ProductYiaAB two helix domain protein 
Protein accessionYP_003123146 
Protein GI256422493 
COG category[S] Function unknown 
COG ID[COG4682] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACCGC TACAAAACAA AACAGAAGAT AACTCCCCCG CCCCCAAACA TGGCGAAAAG 
GGTAGAAACC CATTTAAACC GACTGCCGCA TTCATAGGTG CTTCCTGGAT TGCCCTATTA
ACAGGAGCAG TGGGATATTG CATCGGTTTA TGGAATGCAA ACATGCAGTT AAACGAAAAA
GGATATTATT TAACCATCTT ATTATTTGGT CTGTTCGCAG TAGTCTCTGT GCAAAAAAGC
GTTAGAGATA GGGCGGAAGG ACTTCCTGTT ACAGACCTGT ACTACGGTCT GAGCTGGTTC
GCCACTATTT CATCCATGCT TTTGTTAACC ATTGGTCTGT GGAATGCAGG GATCGCACTG
AGTGAGAAAG GTTTTTACGC AATGGCATTC GGTTTAAGTA TGTTTTCGGC CATTGCCGTA
CAAAAGAACA CCCGCGACTC GAAGATGTTC CAGGACAAAG AACTGTAA
 
Protein sequence
MEPLQNKTED NSPAPKHGEK GRNPFKPTAA FIGASWIALL TGAVGYCIGL WNANMQLNEK 
GYYLTILLFG LFAVVSVQKS VRDRAEGLPV TDLYYGLSWF ATISSMLLLT IGLWNAGIAL
SEKGFYAMAF GLSMFSAIAV QKNTRDSKMF QDKEL