Gene Cpin_3472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3472 
Symbol 
ID8359638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4332992 
End bp4336843 
Gene Length3852 bp 
Protein Length1283 aa 
Translation table11 
GC content43% 
IMG OID644965645 
Producthypothetical protein 
Protein accessionYP_003123140 
Protein GI256422487 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3591] V8-like Glu-specific endopeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.73031 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.526995 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAACAG GTGATAAGGC TAAATTTATA GATGTCGCAG CGTTTTTGCT GCATCTTCAA 
AGAACATCTG GCAGTACTTT GTATATCGTG TCTGCTTCCG GTAGATTTAC TGGTTGGCTG
CTGACCACTG AACTTGTTGT TATACCAGGG TTCGGGTATC TCGATGAAAC GGAAGAAGAG
TTTACCTGTT ATTCTTCGGC TACTGTAGAT AGTGCGCCGT TGAAGGCCAG GTTAGTATCG
ATCGCGGGAA AATGGATAAA AGATCACGAG CGGGTAGCGT TGTTGAAACT GGAAAAGCCC
GTTAGTTATC CGATTCATCA TTTACAAACA GAGAATTGTA AACCAGAGGA TGATGTGATG
GTATTGCAAT ATCCCCAAGG TACCCGTGCT CTGCAACTTA GTTTTGGAAA GATCCGTGAG
GTAAACGATA AGTGGATTGC TTATGATGCA GATACATTGC CCGGTTCCAG CGGAGCGCCT
GTTATCAATA TACAAAATGG TAAATTGATT GCCATGCATC TCCTGGCTGG TGTAGGTGAA
AAGAGGTATA ATAGTGGTGT TACAACAGCC GGTATTATAG GGTTTCTCCG GACAACTGAT
TATTGGCCGC AAATTGCTGC AGCACATCAG TTGTTAGATG CAAAAAGCAT ATTATCAAAA
GACCTGGAAT TTTCCCAGCC TACGCCGCAA TGGGATGAAA TACATTATAA GGCAGCTGTG
CAATGGAATA TCGATCCCAC TGTACTTAGT GAAGAAGAGA AAAAAGCGTT GTCTCCTCAT
CTCATTAGCA AGCAAACGCC GGTATGGGCG TTGAAACCTG TGGACCGCCA GCAGATCCTT
ACTTCGACTT CTATTGACAG TCTGAGAAAT ATAGAAAGTG GTATTGATAA TCATCAGCCT
GGGCAAAAGG TGATCAGGCG TATTTTAAAC GGGGGGCCTT ATAATCTGGA TGAAGTGGAT
GTGGAAGAAC TGCCTTACTG GCTGCAGGCC GTACGCTGGT TTAAAGGGAT TGACGAGACA
TTGCCTGGTC CGGCAGAGGT AGACGGCATA CTTCAGAAGC GACGTATAAG AGCAGCCCTG
ACAAACTTAG GAGGGGCTGG TTTCAGGGGG CGTGAGGAGG AATTGAATAC TTTGAAGACC
TGGTATGAAG ATAACAGACA GGGATCGATA GTCATCAGTG GAATCGGAGG GATCGGTAAG
ACAGCTTTGA TCAGTCATTT CTGTTTGCAG TTGCCGGAAA ATACCCTCTT ATTGTGGTTA
GACTTTGATC GTGCAGATCT CACTCCTGAT GATCCGCAGT CTATTCTCCG TATCCTTATC
GGGCAGATCA GGGTTCAACG CGCAGATTTT GTCGCTCCAC CGGATAACAA TGACTGGAAA
GTTATGTTCA AAGCCCTGGG TGAAAACCTT AACAAAACGC AGAAAGCACT TACCCCCTCC
TTAATGGTGC TGGATGGTTT CGAAGTAGCA CAGTATGCAA AACAATATCA GGGCATCTGG
GAATTACTCA ATATTATATT AAAAGAATGC CCGTCCATAA AGGTTATCGT TAGTGGCAGG
GCGGCTGTTG CCAGTCTTAA GCTGGCAGAT AAGCCAGCGG CATCACTTCG GCTGACAGGT
ATGAAAATAC AGGATGCAGA AGAAGTGTTG GAAAAGAACG GTTTGAAGAA TGCAGCTGTC
ATCCGGAAAA TGGCAACCAT GTCAAAGGGT ATTCCGTTGA TACTGAAATT GGTAATCCAC
TACGTCAATA AAGGGGGAGA TGAAAATGAA CTGCAGCATG GATTACCCAA AGATACGATT
GAAGGATACC TGTATCGCCG CATTTTATAC AGGGTATTAG ATGCTGACCT GCAGCCATTG
ATAAGGGAGG CGCTTATCCT CAGAAAGATA ACAAGGGATA TTATCAACGA AATACTTTTC
TCATTGCTTC CCGCTAATAC AACTGTTGAC GAAGTATTTG ATAAATTATC TAAAGAAATG
TCATTGCTGG AAGATGGACA GGAGGGTTTG GCTACAATTC CTGGCGAAGA AGATGTTTTA
AAATTACGCC CTGAGCTACA TACTTCTACT ATCAGACTGC TTGAACTGGA AGATGCGGCG
TATGTAAGAT CGGTAGATCA AAAGGCGGTG GATTACTATC GTAAGCAGGA TCTTTCCTTT
CATGAACATA CTGCGGAATT AGTGTATCAT TCATTACGAC TGGGAAACTT ACAGGATGCA
AAAAAACACT GGCGACCAGA AATAGCGCTT TATTTGAAAA ATTCAGTGGA AGATCTGCCG
GAGAAGAATA AGGCGGAAAA AGACTGGTTA AAGGACATGA TTAACCAGTC ACTCTCTGAG
ACAAAGGATG ATATAGCTAT TTGGGAATCG GAGACCTATA CTATTCTAAA GGAATCTATT
GCGCGTAAGT CCTACTCGGA CAGCGTCAGG CAGATATTGA ATCATCGGAA AGAAAGAAGT
GCTGATAGTC CCTTATTGAT CTATGATGCT TGGGTAACAT GGCAGGAGGG AAACCTGGAA
GCAGCGATCA GGTTATTAAA AAACAGCAAA ACGACGGAGC CCCGCATCAG GAAAGATCAG
TTGATCTTTC TTGCATTGCT GGAAACTTAT AATGGCAACA GGGCGATAGC GGATCATTAT
TTATCACAGA TTAATACTGA TCAGTGGAGT AACAGGCAAT TTGGCAATAC AGAGAACCTG
GCAGTAGCAG CGGCAAGAAT GCGTCTGACG GTAGATTTAG AAAGAGAGTT AAGGGTTTTA
CAGGCAATAA GAGAAGAGGC GGGTGTTAAA AGGATGGTAC TCGAACAGCA TATCCTGCAA
AGGAGGGATG TGGTATGGCC CGCTTTGATA GAAGTGCTTG ACAACAGGAC TGATGATAAT
TACGTGGCCG CTTATCAGAG TCTTACCGAT AAAGAAGGAC GTTTGAAATA TGAAACTTCC
GGCAAGTTCA GGTTAGGTAT GAATGCGTCT GACATCCGCA GTCTTAATGA GCGTAATCAG
TCCTTTATCA GGTCGAATGC AGAGAACACT TCATCACCGG TACTATTTGA ATCTATCTGG
TATCTGTTAA TGTTATCGGA ATTCCGTCAG AAACAGCTGA CAGATAAGGA TGTGTTACGC
GATATTTTAG AAATCGCCAC TATTCCCAGA AAGTCAATGT CGACGCTGGA AGTGGCTATT
GTTTTTAGTT TGACGGTATT TCATGGAGAA GAAATGCCGG TACTATACAA AAGCTTTCGT
TCTCCTTCTG TGGATGATCT TATTCTCAAT GTAGCCAGTA AATATATACA GACAGGACTG
CCCCCGCTGG AGCTCAGACG AGAGGAGCTA CTCACCACTT ATCTGAGAGA ACGAAATTTA
TCATCAAATA GCAATATACA AACACAATTC CTTATTGATA TCATTCAAAG GGGGAATGAT
GCCGACAGAC AGGATATTGT ACGGATCATC AGAAATATGA GGGATGAAAA GCTGGCGGCC
GTTATATTCT ATCTTGTAGG GCCAGACCCG CTGGAAGTAC TCTGTAAGGG ACTGCTGGGT
GTTGGCGAAG AATCGAAACT AAATGCGAAA CAAAAAATAA CACCCACGGG AATGGAACTG
GAAGATCTGG TAGATGCGGT GTCAAAAATG CCTATGGATA TAAACGATAT CATGCGTTAT
TTGCTTGCGG AGCATGTGAA GGTGCAAATG ATAGATTTAA GCGGCTCTCC AAGAATGATT
TGGTTGAACG TGATTAATTA CCTGGTGCAA AACAATCAGG TCAACACATT GTCAGACATT
CTCCGCGATC TTGCGAAGGA TAATCCACAA CTGTTGACCA CGACTGAACG TTTTACAACT
TTATTGAGGT AA
 
Protein sequence
MITGDKAKFI DVAAFLLHLQ RTSGSTLYIV SASGRFTGWL LTTELVVIPG FGYLDETEEE 
FTCYSSATVD SAPLKARLVS IAGKWIKDHE RVALLKLEKP VSYPIHHLQT ENCKPEDDVM
VLQYPQGTRA LQLSFGKIRE VNDKWIAYDA DTLPGSSGAP VINIQNGKLI AMHLLAGVGE
KRYNSGVTTA GIIGFLRTTD YWPQIAAAHQ LLDAKSILSK DLEFSQPTPQ WDEIHYKAAV
QWNIDPTVLS EEEKKALSPH LISKQTPVWA LKPVDRQQIL TSTSIDSLRN IESGIDNHQP
GQKVIRRILN GGPYNLDEVD VEELPYWLQA VRWFKGIDET LPGPAEVDGI LQKRRIRAAL
TNLGGAGFRG REEELNTLKT WYEDNRQGSI VISGIGGIGK TALISHFCLQ LPENTLLLWL
DFDRADLTPD DPQSILRILI GQIRVQRADF VAPPDNNDWK VMFKALGENL NKTQKALTPS
LMVLDGFEVA QYAKQYQGIW ELLNIILKEC PSIKVIVSGR AAVASLKLAD KPAASLRLTG
MKIQDAEEVL EKNGLKNAAV IRKMATMSKG IPLILKLVIH YVNKGGDENE LQHGLPKDTI
EGYLYRRILY RVLDADLQPL IREALILRKI TRDIINEILF SLLPANTTVD EVFDKLSKEM
SLLEDGQEGL ATIPGEEDVL KLRPELHTST IRLLELEDAA YVRSVDQKAV DYYRKQDLSF
HEHTAELVYH SLRLGNLQDA KKHWRPEIAL YLKNSVEDLP EKNKAEKDWL KDMINQSLSE
TKDDIAIWES ETYTILKESI ARKSYSDSVR QILNHRKERS ADSPLLIYDA WVTWQEGNLE
AAIRLLKNSK TTEPRIRKDQ LIFLALLETY NGNRAIADHY LSQINTDQWS NRQFGNTENL
AVAAARMRLT VDLERELRVL QAIREEAGVK RMVLEQHILQ RRDVVWPALI EVLDNRTDDN
YVAAYQSLTD KEGRLKYETS GKFRLGMNAS DIRSLNERNQ SFIRSNAENT SSPVLFESIW
YLLMLSEFRQ KQLTDKDVLR DILEIATIPR KSMSTLEVAI VFSLTVFHGE EMPVLYKSFR
SPSVDDLILN VASKYIQTGL PPLELRREEL LTTYLRERNL SSNSNIQTQF LIDIIQRGND
ADRQDIVRII RNMRDEKLAA VIFYLVGPDP LEVLCKGLLG VGEESKLNAK QKITPTGMEL
EDLVDAVSKM PMDINDIMRY LLAEHVKVQM IDLSGSPRMI WLNVINYLVQ NNQVNTLSDI
LRDLAKDNPQ LLTTTERFTT LLR