| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3469 |
|---|
| Symbol | |
|---|
| ID | 8359635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4327916 |
|---|
| End bp | 4330471 |
|---|
| Gene Length | 2556 bp |
|---|
| Protein Length | 851 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644965642 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003123137 |
|---|
| Protein GI | 256422484 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1401] GTPase subunit of restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0603195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.212909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTTA TTTATACCTG GATCCCTGCC TATAAGGCAA TTGTCGAAAA AATCACTTCT
TATCGTAGTA ATCAGCTCAA GTTAATGGAA ATCCTGAAAG AAGCAGGTGC CGATGCATTT
AATGATAAAG ATGAATCGGG TAATGTTATT CCATTAACAG AAATTGATCC TTTCACCTTT
CTCTGTTGTG GGAATAAATA TGGAGAGGTC CGGAAGAAAC AGGTCCTTAC GAATGTGTGC
AGGCTCCTGG ATATTTCGCC ATTGCCGAAG GATGCTTGTG GGATACCCAC GTCAGATGCA
AGGAAGCTTT GGTTGTTCCC ATACAAAGCG GAAAGGGTCA ATAATGAAAT AGGACGATTG
TGGGATTTCT TTGAGAAATT ACTGGCGGAC CGGCTTACAG ATGCAGACTT TTCGGATATA
TTGAAAATAA ACGGAGTTGG AAAAGCGAAG TTGTCTGAAG TGATGTATAT GGTGAGGCCG
GCAGATTATT TATGCCTGAA TAGCGCTGTG AAACCATATT TAGCTAAGAA GTATGGCATT
AATACGGACT TCAGTTCCTA TACTGAATTT AAGCAATTGT GTCAGAGAAT TCAGGAGGTG
GTGCAATTGC CTTTTCATGA GATTTCGTTC AAGGCATATA TAAACAGAGA ATTTGGAGAC
AGGATGCCGT CTTATTACAG GATTGGCTCG ACTGAAGAAG GCGTGTCCAG ATTGGACGAT
ATGCAAAGTA ATAATATAGT TGCGATAGGG TGGAGTGATA TCGGGAATAT AGAATTATTG
GATCCGCTTT CAAAAAGCGG TATTCAGGCG AAGATGCAGG AGATTGGATA CTATAAAGGG
AATAAGTCCT CTATTTCCAG GAAGGCGGGA GAGATCTGGC GTTTTTATCA TGAGATAGAA
CCAGGAGATA TCGTATTAGT AGCAGATGGC GAGTCTATAA AAGCGATTGG CAAGGTTAGT
TCCTACCACT ATGTCTATGA AGACGATCTT GAGTTTCCGC ATTGTCGTTG TGTAGAGTGG
TTGAAAAAGG ATATCGAAGA CCTGTATATG ACTGAAGGCG TAATGACTTC GGTCTGGAAA
TTTGAATATC CTTACAGCAT TGAAGCCATT GAAAAGTATC TCGGATATGA TGAAAGAACG
ATGCCTGCCA ATAATGCTGC GAACATGCTA AAAACAAAGA AGATGAACCT GAACACCATT
TTATATGGAC CTCCCGGTAC CGGTAAGACT TATAAATTGC AGCAAATTAT TAAGGACTGG
CAATTGGTAG GTAGTAATGA TGTACCGGAC CTTAACTATG AGTTATTTGT TGAAGAATAT
AACTGGTGGG AACTGCTGGC AATGGCATTG CTGGATCAGA AGAATGTAAG TGTTCCGCAA
CTAAGATTAC ATCCGCTTGT GCAGGCGAAG TTTAATATCA GCACTATAAG AAACCCCGGA
TCCAGACTTT GGAGTACGTT GCAGAATCAT ACGGTGCTGA CTTGTGAGAA TGTTTCTAAA
CAGGAAAGGG TAGGTGCTAG TCTGATTTTT TATAAGGAGA AGAACTCCAG CTGGCGATTG
GATAATGAAG CGGAGTTCAG GTTGTCATTT CCGGAGCTGG TGCAGGATTG GGAGAATTTT
AAAAACCCCG AAACAGCAAA GAAGGAGATC AAAAAGTACA TATTTACTAC CTGTCACCAA
AGTCTTTCCT ATGAAGATTT TATTGAAGGA ATCAAACCAA AGCTGATAGA CAAGGATGCA
GATAATGAAC TAAATGGAGC GAACGTACAA TATGAAGTAC GGAAAGGTAT TTTCTACAAA
GCCTGTGTGA AGGCTTGCCA GTTGGCCGGC TATGCGTCAT TGGAAGAGTG TATGAGGGAT
ACACCTGATG GTAGAAAAAC GAAATTCGAA ACGGCCATCA TGGAGAACAA TATCATGGTG
TTATTCATAG ATGAGATTAA CCGCTGTAAT GTATCCGCTG TTTTTGGAGA GCTGATTACC
TTAATAGAAA CGGATAAGCG CCTGGGCGCT ATTAATGAGA TCACGGATAT TATGCTACCC
TATTCACAGG AGCTTTTTGC GGTGCCTGCT AATCTTTACA TTATCGGCAC CATGAATACG
GCAGATAGAA GTGTGGAGTC GCTGGATACC GCTTTTCGCC GCAGGTTTAG TTTTGAAAGT
ATGCAGCCGG ATATTACGAT TCTGAAAGAC GAAGAAATTG ATACGGTCTC CCTGGATAAA
TTACTGAGTA CGATTAATGA GAGAATCAGC GTCTTATTGA ATGCGGATCA CCAGATAGGG
CATTCTTATT TTATAGGTGT TTCAACAGAA GACGAATTGA AAGCTGTATT CAGCGATAAA
ATTATTCCGC TGTTGCAGGA GTATTTTTAT AATGATTATG GAAAGATCGG CTTGGTGTTG
GGGACTGCCT TTGTGGAAGC GAGAGAACAA ACGGTATCAT TCGCTAAAGG ATTTCCTTAC
GAGAATAAAG AGGATTTAGC AGAGGGACTG ACATATGTGC TGGTACCGGC AGAAGAATGG
ACACTGGCAT CTTTTGAATC AATTTACAAG GATTAA
|
|---|
| Protein sequence | MEFIYTWIPA YKAIVEKITS YRSNQLKLME ILKEAGADAF NDKDESGNVI PLTEIDPFTF
LCCGNKYGEV RKKQVLTNVC RLLDISPLPK DACGIPTSDA RKLWLFPYKA ERVNNEIGRL
WDFFEKLLAD RLTDADFSDI LKINGVGKAK LSEVMYMVRP ADYLCLNSAV KPYLAKKYGI
NTDFSSYTEF KQLCQRIQEV VQLPFHEISF KAYINREFGD RMPSYYRIGS TEEGVSRLDD
MQSNNIVAIG WSDIGNIELL DPLSKSGIQA KMQEIGYYKG NKSSISRKAG EIWRFYHEIE
PGDIVLVADG ESIKAIGKVS SYHYVYEDDL EFPHCRCVEW LKKDIEDLYM TEGVMTSVWK
FEYPYSIEAI EKYLGYDERT MPANNAANML KTKKMNLNTI LYGPPGTGKT YKLQQIIKDW
QLVGSNDVPD LNYELFVEEY NWWELLAMAL LDQKNVSVPQ LRLHPLVQAK FNISTIRNPG
SRLWSTLQNH TVLTCENVSK QERVGASLIF YKEKNSSWRL DNEAEFRLSF PELVQDWENF
KNPETAKKEI KKYIFTTCHQ SLSYEDFIEG IKPKLIDKDA DNELNGANVQ YEVRKGIFYK
ACVKACQLAG YASLEECMRD TPDGRKTKFE TAIMENNIMV LFIDEINRCN VSAVFGELIT
LIETDKRLGA INEITDIMLP YSQELFAVPA NLYIIGTMNT ADRSVESLDT AFRRRFSFES
MQPDITILKD EEIDTVSLDK LLSTINERIS VLLNADHQIG HSYFIGVSTE DELKAVFSDK
IIPLLQEYFY NDYGKIGLVL GTAFVEAREQ TVSFAKGFPY ENKEDLAEGL TYVLVPAEEW
TLASFESIYK D
|
|---|
| |