Gene Cpin_3456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3456 
Symbol 
ID8359622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4313392 
End bp4314057 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content47% 
IMG OID644965629 
Productoxidoreductase FAD/NAD(P)-binding domain protein 
Protein accessionYP_003123124 
Protein GI256422471 
COG category[C] Energy production and conversion 
COG ID[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0147103 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCTA TCGTTAAAAT ACTATCCGCA GACTACGTTA CCCATGACGT GAGAAGGTTC 
AGACTGGAAA AACCGGCAGA CTACATCTTT ACTCCCGGCC AGGCAACAGA GTTATCTATC
AACAAAGAAG ACTGGAAAGA CAAAAGGAAT CCGTTCACCT TTACTGCGCT CACTGATGCA
CCTTACCTGG AGTTTACTAT CAAGATCTAC CCGGAACATC AGGGTGTAAC ACATCAACTT
AGTCTGCTGA ACCCTGGAGA TGAACTCATT CTCCGGGAAT CCTGGGGAGC CATTGAATAC
AAAGGCCCTG GTTACTTCAT TGCCGGCGGT GCAGGTATTA CGCCGTTTAT CGCGATCTTC
CGGCACCTGC ATACAACAGG TAAAGCCAGA GAGAATAAAC TGTTCTTCTC CAACAAAACG
GATAAAGACA TTATCCTGGC GGAAGAGCTG AAAAACATCC TGGGAGATAA TGCCCATTTT
ACGATCACCC GGCAGAAAGA CAGTCAGCAC GATCAACGAC GGATAGACAG TGATTTCCTG
AAAGCAGAAA TCAACGATTT CAGCAAACAC TTTTACATCT GCGGGCCTGA CCCGATGGTA
CAGGAACTGA CGGCTACACT GGAACAACTA GGCGCCAATG CAGATGCAGT GGTGTTTGAA
AAATAA
 
Protein sequence
MEAIVKILSA DYVTHDVRRF RLEKPADYIF TPGQATELSI NKEDWKDKRN PFTFTALTDA 
PYLEFTIKIY PEHQGVTHQL SLLNPGDELI LRESWGAIEY KGPGYFIAGG AGITPFIAIF
RHLHTTGKAR ENKLFFSNKT DKDIILAEEL KNILGDNAHF TITRQKDSQH DQRRIDSDFL
KAEINDFSKH FYICGPDPMV QELTATLEQL GANADAVVFE K