| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3452 |
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| Symbol | |
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| ID | 8359618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4309342 |
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| End bp | 4309938 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644965625 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003123120 |
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| Protein GI | 256422467 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0584888 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATGTTG TTCAGGATAC AGACAAACTA TTGCTCGCGG CCTTGAAAAA AGGCGATGAA
CTCGCCTTCA GTGTCTTATA CGACCGTTAC TGGGCGGAAT TATATACGAT GTGCTACCGC
AGGATCGGTG ATGAAGATGC TGCAAAAGAC ATTGTACAGA ATATATTTGT CAATCTCTGG
ACCTCCCGTA AAGAGATCCT CATAGAAAAT ACCCTGGCCC CTTATCTCAA CAGGGCCGTG
CGCAACAGGA CCATCAGCTT TTATAAAAAG AACATGGCCA GCATGAGCCG GGATGCACAG
TTTCAACACG AACAGGTACA ATACGCGCCT GATTCCAGCC TGGATGCCAA AGAACTGGAA
GCCGTCATTA ATGATGAAAT AGCCAGCATG TCAGATACCA TGCGGAAAGC TTTTGTATTA
AGCCGTCATG AAAATAAATC CATCCGTGAA ATAGCGACAG AGCTCTCCCT TTCTGAACAG
ACAATTAAAA ATAATATCTC TCAGGCACTC GACCGGCTGA GAAAAAAGAC ACAATCCTTC
TACGCAGAAC CTGCCAACAT ACTCGGCGTC CTCATTATCC TGTTAACAAA ACCGTAA
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| Protein sequence | MDVVQDTDKL LLAALKKGDE LAFSVLYDRY WAELYTMCYR RIGDEDAAKD IVQNIFVNLW
TSRKEILIEN TLAPYLNRAV RNRTISFYKK NMASMSRDAQ FQHEQVQYAP DSSLDAKELE
AVINDEIASM SDTMRKAFVL SRHENKSIRE IATELSLSEQ TIKNNISQAL DRLRKKTQSF
YAEPANILGV LIILLTKP
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