| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3446 |
|---|
| Symbol | |
|---|
| ID | 8359612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4298792 |
|---|
| End bp | 4299658 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965619 |
|---|
| Product | Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase |
|---|
| Protein accession | YP_003123114 |
|---|
| Protein GI | 256422461 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00824899 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.114514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGTA TTATTAAATC AGGATTGATT CAGATGAGCT TACCCAAAAC AGAAGGCGAA
GGTACCATTG AAGAGATAAA GGAAGCGATG ATTCAGAAAC ACATTCCCCT GATAGAGGAA
GCCGGAGAAA AAGGTGTACA GATCCTTTGT TTACAGGAAA TTTTCGACAC CCCTTATTTT
TGTCCGGGCC AGGATGCCAA ATGGTATGCT TCTGCTGAAA CAGTACCTGG TCCTACAACC
GAACGCATGG CCGCCTATGC AAAGAAATAC AACATGGTGA TCATCGTACC GATCTACGAA
AAGGAACAGG CAGGCGTATT ATACAACACC GCCGCTGTGA TCGATGCAGA TGGTACCTAC
CTGGGCAAAT ACAGAAAGAA TCATATTCCG CATACTTCGG GCTTCTGGGA GAAATTCTTC
TTTAAACCGG GTAACCTCGG CTACCCCGTG TTCCAGACGA GATATGCAAA GGTAGGTGTC
TACATCTGCT ATGACCGGCA CTTCCCGGAT GGCGCACGGA TACTCGGACT CAATGGTGCA
GAGATCGTAT ATAATCCGTC GGCAACAGTA GCCGGTCTGT CACAGTATCT ATGGAAACTG
GAACAACCTG CTCATGCAGC TGCCAATGGT TATTTCATGG GCTGTATTAA CAGGGTAGGA
GAAGAAAAGC CCTGGAATAT AGGTAAGTTT TATGGGTCTT CGTACTTCGT GGATCCCCGC
GGACAAATAT TCGCCAGTGC TTCCGAAGAC AAAGACGAAC TGCTGATCGC CTCTTTCGAC
CTCGACATGA TAGACGAAGT CAGGAATGTG TGGCAGTTCT TCAGAGACCG CCGGCCGGAA
ACCTATGGTA AACTGACGGA GTTATAA
|
|---|
| Protein sequence | MSRIIKSGLI QMSLPKTEGE GTIEEIKEAM IQKHIPLIEE AGEKGVQILC LQEIFDTPYF
CPGQDAKWYA SAETVPGPTT ERMAAYAKKY NMVIIVPIYE KEQAGVLYNT AAVIDADGTY
LGKYRKNHIP HTSGFWEKFF FKPGNLGYPV FQTRYAKVGV YICYDRHFPD GARILGLNGA
EIVYNPSATV AGLSQYLWKL EQPAHAAANG YFMGCINRVG EEKPWNIGKF YGSSYFVDPR
GQIFASASED KDELLIASFD LDMIDEVRNV WQFFRDRRPE TYGKLTEL
|
|---|
| |