| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3431 |
|---|
| Symbol | |
|---|
| ID | 8359597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4273574 |
|---|
| End bp | 4275271 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965604 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_003123099 |
|---|
| Protein GI | 256422446 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02510] ribonucleoside-diphosphate reductase, alpha chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATAA CAGAATTAGC ACAGCTAACA GGTGTGACGG AACAATACGA AATGCCTAAG
TTGTGGTGGA AGAATTCAGA GAGTGAACAG ATCCTGAACA GAGGATATCT GTTAAAAGGG
GAAACAGTTG AAGGGGCAAT TGACAGGATT TGTACCGCTG CTGCACAGCG TCTCTATAAA
CCGGAACTGA AAGAAGCATT TGTTGAGATG ATCGAACGAG GCTGGATGAG CCTCAGCTCT
CCTATCTGGG CCAATATGGG TACAGAGCGT GGATTGCCGA TTTCCTGCTT CAATGTGCAT
ATTCCGGATA ATATTGAAGG AATTACACAT AAGCTGGGTG AAGTGATCAT GCAGACCAAG
ATAGGTGGAG GTACTTCTGC TTATTTCGGC GGACTGCGTG CCCGTGGTAG CGCAGTAACA
GATAATGGTA AGAGCAGTGG AGCGGTGAGC TTCATGCGTC TGTTCGATAC TGCTATGGAT
ACGATCTCTC AGGGTGGTGT ACGTCGTGGC GCATTTGCTG CCTATATGGA TATCGACCAT
GATGATATCC AGGAGTTCTT ATCCATCAAG GATATCGGTC ACCCGATCCA GAACCTCTTC
TATGGTGTAT GTGTACCTGA CTACTGGATG CAGGATATGA TCGATGGTGA TATGGAGAAA
CGTGAGATCT GGGCGAAAGT GCTGGAAAGC CGTCAGCAGA AAGGGCTGCC TTACCTGTTC
TTCACCGACA ACGTCAACCG TAACAAACCA CAGGTATATA AAGACCTTAA CCTGGCTATC
AACGCCAGCA ACCTCTGTTC TGAGATCATG CTGCCGTCTA CGGAAGATGA GTCTTTCATA
TGCTGTCTCT CTTCCATGAA CCTTGAATTA TACGACGAGT GGAAAGATAC AGATGCCGTT
AAACTGGCTA CTTTCTTCCT GGATGCCGTA TTGCAGGAGT TTATCGTTAA AACAGAAGGC
AATCACTTCC TGGCGGCGGC GAACCGTTTT GCAAAACGTC ACCGTGCATT AGGTCTGGGC
GTACTGGGAT GGCATTCTTA TCTGCAGAAA AATATGATTG CTTTTGAAGG TATGCAGGCA
AAACAACTGA CCTCTATCAT CTTCAAAGAT ATCAGAGATA AAGCTGAAAA AGCGACCAAA
GAACTGGCAT GGATCTATGG AGAGCCGGAA GTACTGAAAG GCTATGGCCG CAGGAACACC
ACGCTGATGG CGATTGCTCC TACTACTTCT TCTTCTGCGA TACTGGGTCA GACTTCTCCT
GGTATTGAGC CATTCAGCAG CAACTATTTC AAAGCGGGTT TGTCCAAGGG CAACTTCATG
CGTAAAAACA AATACCTGAA AGCCCTGCTG GAGCAGAAAG GTATCGACAA CGAAGACACC
TGGCGCAGCA TCATGCTGAA CCACGGTAGC GTACAGCATC TGGAGGAGTT GACAGAACAT
GAAAAAGATG TGTTCAAGAC CTTCAAGGAG ATCAGTCAGC TGGAGATTGT TCAGCAGGCC
GCTATCCGTC AGACGCATGT TGACCAGGCA CAGAGTCTGA ACCTGAACAT TCCTTCCAAC
CTGCCGGTGA AAGAGGTGAA CAGACTGCTG ATTGAGGCAT GGAAATTAGG TGTGAAGACA
TTATACTACC AACGTAGTCA GAGCGTGTCT AAAGAGCTGG TGAACAGTCT GGTGACATGT
AAGAGCTGCG AAGGATAA
|
|---|
| Protein sequence | MAITELAQLT GVTEQYEMPK LWWKNSESEQ ILNRGYLLKG ETVEGAIDRI CTAAAQRLYK
PELKEAFVEM IERGWMSLSS PIWANMGTER GLPISCFNVH IPDNIEGITH KLGEVIMQTK
IGGGTSAYFG GLRARGSAVT DNGKSSGAVS FMRLFDTAMD TISQGGVRRG AFAAYMDIDH
DDIQEFLSIK DIGHPIQNLF YGVCVPDYWM QDMIDGDMEK REIWAKVLES RQQKGLPYLF
FTDNVNRNKP QVYKDLNLAI NASNLCSEIM LPSTEDESFI CCLSSMNLEL YDEWKDTDAV
KLATFFLDAV LQEFIVKTEG NHFLAAANRF AKRHRALGLG VLGWHSYLQK NMIAFEGMQA
KQLTSIIFKD IRDKAEKATK ELAWIYGEPE VLKGYGRRNT TLMAIAPTTS SSAILGQTSP
GIEPFSSNYF KAGLSKGNFM RKNKYLKALL EQKGIDNEDT WRSIMLNHGS VQHLEELTEH
EKDVFKTFKE ISQLEIVQQA AIRQTHVDQA QSLNLNIPSN LPVKEVNRLL IEAWKLGVKT
LYYQRSQSVS KELVNSLVTC KSCEG
|
|---|
| |