Gene Cpin_3428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3428 
Symbol 
ID8359594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4270594 
End bp4272009 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content47% 
IMG OID644965601 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003123096 
Protein GI256422443 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAGAT ACAAGAAATA TGTCCTGGCG ACACTGATGA TAGGCACTTC CATGGCAGCA 
ATCGACAGCA GTATTGTAAA CGTCTCTCTT CCGGTGATAC AGCGTCAGTT CGATGTGGGC
CTGGATGATG TCTCCCTCGT CATTACAGCT TATATGATCA CTTTCCTGCT GTTTATCCCG
CTGACCAACT GGTTGAAGAA CAGGGTAGGG TACTATCACC TGTATATGGC AAGTATCATC
GTATTTGTGC TGGGTTCGGC TTTGTGCAGC ATCGCAGGAA GTATTGATAT GCTGGTATGG
TCGAGGGTAA TACAAGCTGT CGGGGGTGGT TCTATTGCGC CTGTTTCACT GGCGATTCTC
TCGGAGAGTT TTCCCCAAGA TGAACGGGGT AGTGCAATAG GATGGTGGGG AATCGGCAAT
GTAATGGGAC CAGCACTAGG ACCGACACTC GGCGGTGTAT TAACGGAATA TCTTGGCTGG
CAGGCAATCT TCTACGTCAA CATACCCATA GGTATCATCG CGATCCTGAT GAACATGCGC
TACCTGAATT TTCTGAAATC ACGTAAACGT TATAGCGAAC CTTTTGACTT TAAAGGATAT
TTCCTCTTTA TCTGTTTCAT TATATTACTC CAATTCACGC TGACCAGTAC AAGTGATAAA
TTCGGTTTCA CCTCCTGGCA GTTTATCTCG GGTGTCCTGC TGACGGTCTT ATCACTATGG
TTGTTCATCC GTTCTTCCCG AAAGCCCTCC GCATTACTGG ATCTCTCCGT ATTCCGCGTT
GCGGCTTTCA ATCGTGCCTT TATCATCGTC GCCCTGCGTT CACTGGCCCT GTTTGGCGGG
ATGTTTTTCC TTCCCTTTCT CCTACAGGGA TATCTGAAAT ATACAGAAAT TCAAAGTGCG
CTCCTGATAT TACCTAATGC GCTTGTTATG CTGCTGACAA GACCGCTGGC AGGTAAAATG
GCAGATGCCG GAGAGATCAG GAATATCTCC GTATTTGGTA TTGTACTGGT GTCCGCATCT
TTCTTCCTCT TTGCGCAGAT CAATACGGGA ACGCCCGTCT GGTTTATTGT CTTATCCATG
ATTGTACGCG GGTTGGGGAT CAGTTTCCTG ATAGCGCCGG TTTCAACAGC GATGTTAAAC
GCTGTAAGCC CGTCACAGAC AGCCACCGCC ACATCCTTAA ACAGCCTGAT GTTACAGTTA
GGAGGCTCCG TCGGTATTGC AATCAGCGGT TCCATGCATA CTTACATCAA TGATCACTAC
CTGGCTAAAG GATACGATAC AATGCTGGCA GAACACTATG CATTGAGGGA TGGATTTCTT
TTTACGGCCG TATTGATGCT GGTGACTTTA ATCCCGGCGT TCAAACTACC GCACAAGGTA
GAGCGGGAAC TGAAGCACAA GGAAGCATTG GGATAA
 
Protein sequence
MLRYKKYVLA TLMIGTSMAA IDSSIVNVSL PVIQRQFDVG LDDVSLVITA YMITFLLFIP 
LTNWLKNRVG YYHLYMASII VFVLGSALCS IAGSIDMLVW SRVIQAVGGG SIAPVSLAIL
SESFPQDERG SAIGWWGIGN VMGPALGPTL GGVLTEYLGW QAIFYVNIPI GIIAILMNMR
YLNFLKSRKR YSEPFDFKGY FLFICFIILL QFTLTSTSDK FGFTSWQFIS GVLLTVLSLW
LFIRSSRKPS ALLDLSVFRV AAFNRAFIIV ALRSLALFGG MFFLPFLLQG YLKYTEIQSA
LLILPNALVM LLTRPLAGKM ADAGEIRNIS VFGIVLVSAS FFLFAQINTG TPVWFIVLSM
IVRGLGISFL IAPVSTAMLN AVSPSQTATA TSLNSLMLQL GGSVGIAISG SMHTYINDHY
LAKGYDTMLA EHYALRDGFL FTAVLMLVTL IPAFKLPHKV ERELKHKEAL G