| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3424 |
|---|
| Symbol | |
|---|
| ID | 8359590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4260743 |
|---|
| End bp | 4263286 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965597 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003123092 |
|---|
| Protein GI | 256422439 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.052799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGTTG GTGTAACAGT TTTTAACCCA TCTTTTCTGC AGATTAAGTT TGGGAAACAA
TCATTACCTC AAATAGCAAT TATTATGCAG ATTTTCTATA ATGTAAAGAC GCCGTTTTGG
TTGCTGTCAT GCCTGCTCCT GATGTTCTCA GGTAGCATGT ATGCACAGCA ACCGGCAGCC
GGAAACGGGC TGAAAGGACG ACTATCCGGC ACCGGCGGTA CAGCATTAGA GTTTGCCACC
GTCAGCCTGC TCAAGGCATC TGATACGAGT CTGGTAAAGA CAGTGGTGAG CGATGCCAGC
GGTGTTTTCG ATTTAGGTAA CATTCCGGAC GGCAGCTACG TCCTGCACGT TTCCCTGGTA
GGATACAAGA CAGTCCGGAA GCCGGTAGAA CTGAACGCGT CCGCCGGTCC GCCGGATCTC
GGTAATCTCT CCATGGAGCA GAATGTCAGC AACATCAAAG AAGTCGTCGT TGCCGGCAAA
AGACCACTGA TAGAACGTAA GCTGGATAAA ACAGTCATGA ACATTGAAAA TAGCCTCCTG
GCTACCGGTA GTACCGCACT GGAACTACTG CAACTCGCGC CGGGTGTGAC GATCTCCAAT
AATGATAAAG TCCAGCTGTA CGGTAAAAGC AGTCCGCTGA TCATGATCGA TGGCAAACCC
ACATATCTGT CTGCCGCACA GGTCAGCAAC CTGCTGAAAA GTATGCCTTC CAACACAATC
GCGACGATAG AGATCATCAG CCAGCCAGGC GCTAAATACG ACGCCGCAGG TACGGGTGGG
GTGATCAATA TCAGAACGAA ACAAAACGGT AGCGCAGGCT TTAACGGTAC CGTAACGGGT
GGTTTTGGTT ACGGTCGCAG GGAAAAATAC AGGGGTGGCC TTACGCTTAA TTACAAGAAG
AATAAGGTCA ACCTGAGTGG TGACTACACG TATTCCTTCA ACCACTCTGT CAGATACCTG
GATATTGACA GGGATGTCAG ACAAGACGCT ACCAGCACGT TCTTCGGCAG GTCCGGTGAA
ACCCACAATG AACTGGGCAC CCACACCTAC AAGGCCGGCA TCGTTTATAA CATCAACCCT
TCTCATGCCA TCGGTTTGCA GGTAATGGGG TATGCCAACG ATCAGCGCAC AAATGCGGAC
AACAAAACAG ATATCCGCAG CGAAAAGCTG AAAGTAGACT CTATGATGAC CGCCAACGCA
AAAGAAAAAT CAGGTTTCAA TAACATCGGT GGTAACCTTA ACTACCGAGG TAAATTGGAT
ACGCTGGGAA GAGAATTAGG CATAGACGTC GATTATTCCC GCTTCCGTAA TAACATTAAC
AGAAACTTCG TCAATACCCT GTATGACAGT CAGGGGATTA ATATCGGAGA TCCTGATTAT
GTCCGAAACT ATTTTCCGAC TACCGTAAAA GTCTTTGCTG CCAAAACGGA CCTGGTATTT
CCATTGGCCA AACAGGCAAA GATTGAAGCG GGTCTCAAAA CAAGTTTCGT ATCTACTGAC
AATGACGCCC GCTTTGACTC CCTGCTCAGT GGTGAATGGG TCGTATCTAA ATCGCAGACG
AACCACTTCA TCTACAAAGA GAATATCAAT GCCGGTTACC TGAACTTCAG TAAAAAATGG
AACAAGACCA GTCTGCAGGC CGGTCTGCGT GTGGAACAAA CCAACTCTGA CGGTAATTCC
GTTACCCTGA ATACCCGCAC AGAGCGTTCC TACACCAACC TGTTCCCAAG TCTGTTCCTG
AGCCGTAAAC TGGCGAAAGA CCATGACCTG ATGGTATCTT ACAGTAAACG TATAGAAAGA
CCCAGCTACC AGGATTTGAA CCCCTTCCGG TTTTATGACG ACCGCTATAC TTACCGCGAA
GGCAATCCTT ACTTAAAGCC CGCTTATACG CATTCATTCG AAGCAACTTA TTCATGGAGA
AATGAAATAA CTTTTGTCGC ACGCTATGGT CTTACAAAAG ATGTGATAGC CGAAGACATT
CAGCAGGAAG CAGGCAGCAA TGCCACCAGG TCTTTCCTGC GCAATCTTCA AAAATTACGT
ACAATATCAG GGAGTCTTTC TTATTCAAAA GATATCACAG ACTGGTGGTC CACAGATAAT
ACAGTAACTT TCAACCGTAG CCAGTACATC GATGATAACG CCGGTAACTA TCGCAACTTC
GATAACTACG ACGTCAATAT CAACATCTAT CAGTCTTTTA AACTCACTAA AAACCTCTTC
CTGGACGTAG GCGGTTTCTA TCTTTCCCCA TGGCTGTATG GCTTCATAAA AGCAGAAGCG
CAATACAAAC TGGATGTAGG ACTGAAACAG AATGTCCTGA ACAAAAAAGG CAGTATACGT
CTGCGGGTAA GCGACGTATT CAACACGAAC CGTTTCAAAG GAAAAGCGAT CTACAACAAT
GTGGATGTAG CCATCCTGAA CCGCTTTGAA TCCCGTGTAG CCTGGCTGAC CTTCACTTAC
ATGTTTGGAA ATACGAAACT GAAAGTTGCA AAACGTGGAG ATAGTACGAA AGAAGAAAAA
GACCGCGTGA AAAAAGAAAA CTAG
|
|---|
| Protein sequence | MPVGVTVFNP SFLQIKFGKQ SLPQIAIIMQ IFYNVKTPFW LLSCLLLMFS GSMYAQQPAA
GNGLKGRLSG TGGTALEFAT VSLLKASDTS LVKTVVSDAS GVFDLGNIPD GSYVLHVSLV
GYKTVRKPVE LNASAGPPDL GNLSMEQNVS NIKEVVVAGK RPLIERKLDK TVMNIENSLL
ATGSTALELL QLAPGVTISN NDKVQLYGKS SPLIMIDGKP TYLSAAQVSN LLKSMPSNTI
ATIEIISQPG AKYDAAGTGG VINIRTKQNG SAGFNGTVTG GFGYGRREKY RGGLTLNYKK
NKVNLSGDYT YSFNHSVRYL DIDRDVRQDA TSTFFGRSGE THNELGTHTY KAGIVYNINP
SHAIGLQVMG YANDQRTNAD NKTDIRSEKL KVDSMMTANA KEKSGFNNIG GNLNYRGKLD
TLGRELGIDV DYSRFRNNIN RNFVNTLYDS QGINIGDPDY VRNYFPTTVK VFAAKTDLVF
PLAKQAKIEA GLKTSFVSTD NDARFDSLLS GEWVVSKSQT NHFIYKENIN AGYLNFSKKW
NKTSLQAGLR VEQTNSDGNS VTLNTRTERS YTNLFPSLFL SRKLAKDHDL MVSYSKRIER
PSYQDLNPFR FYDDRYTYRE GNPYLKPAYT HSFEATYSWR NEITFVARYG LTKDVIAEDI
QQEAGSNATR SFLRNLQKLR TISGSLSYSK DITDWWSTDN TVTFNRSQYI DDNAGNYRNF
DNYDVNINIY QSFKLTKNLF LDVGGFYLSP WLYGFIKAEA QYKLDVGLKQ NVLNKKGSIR
LRVSDVFNTN RFKGKAIYNN VDVAILNRFE SRVAWLTFTY MFGNTKLKVA KRGDSTKEEK
DRVKKEN
|
|---|
| |