| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3383 |
|---|
| Symbol | |
|---|
| ID | 8359549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4147674 |
|---|
| End bp | 4148546 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644965556 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003123051 |
|---|
| Protein GI | 256422398 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0398401 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.637416 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCAT TACCTGGTAT TCCCACACAT ACTATTTCAC AGGTCGATAA GGAAGGGATC
TTTGTGCGTT ATTTTGATGA AACGATTGCA GACAGGCATT ATCTCCAGCT CGTTCACAGG
GATGATTTTT ATCTGCTGGT ATACCAGGAA AGAGGCAGCT CCGGACTATT TGTCGATTTT
CAGGAAATTA GTTTTGAAGG TCCATCTCTC TTTATTATTC TCCCCGGACA AATGCATTAC
GGACTTTCCA GTCAGCAGTC CGCCGTATTC CTGCTAGCCG TCAATCCAAG TCTGATCAAT
GAACAATACC AGTCACTCTT CCACCTGGCC ATGGGAAGTA TCCGGCCAAT GCCGCTTACC
CCTTCATTAG CTGCGCTTTT AAAACAGAAC ATACAGTTGA TACAGCATAC GACGGAAAGC
AAAAATGAGT TGCCGTTTTA TAATAAAAAT ATCAGGCATC TCACCGAAAG TTGCCTCAGC
ATATTTGCCT CCGTATACTA TAAAGAAAAG CATAGTCAGC ACAGCCGCGG TACAAGAATG
ATCGATATCA GCCGTCAGTT CATATCACTG CTGATGCAAC ATTTCAGGAC CATAAAAAGT
CCTGCGGCAT ATGCAGATAT GTTACATATC ACCACCGACT ATCTCAATGA AGCCGTAAAA
GCCGCTACAG GAAAAACAGT CTCACGCTGG ATACAGGAAA CAGTCGTGAC CGAAGCCAAA
CGGCAGCTAT TTCATACGAC ATTAAATATC GACGAAATTG CCGGGCAACT GGGCTATGAA
GATTACAGGT ATTTCACCCG TTTATTCAAA AAAGCAGCAA GTATATCTCC ACAGCAATTC
AGAACCCAAT ACAGCCGGGA AAAGGATGCC TGA
|
|---|
| Protein sequence | MRALPGIPTH TISQVDKEGI FVRYFDETIA DRHYLQLVHR DDFYLLVYQE RGSSGLFVDF
QEISFEGPSL FIILPGQMHY GLSSQQSAVF LLAVNPSLIN EQYQSLFHLA MGSIRPMPLT
PSLAALLKQN IQLIQHTTES KNELPFYNKN IRHLTESCLS IFASVYYKEK HSQHSRGTRM
IDISRQFISL LMQHFRTIKS PAAYADMLHI TTDYLNEAVK AATGKTVSRW IQETVVTEAK
RQLFHTTLNI DEIAGQLGYE DYRYFTRLFK KAASISPQQF RTQYSREKDA
|
|---|
| |