Gene Cpin_3376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3376 
Symbol 
ID8359542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4138842 
End bp4139690 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content43% 
IMG OID644965549 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003123044 
Protein GI256422391 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.125379 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATG TATTGAAGCA GTTCTTCTCC AAGAAATTCG GATATATAGA TTTTGATGCC 
GATACGGCAG ACGATCTCCT CTACGAGGAG TATAATTCTT TTATTAAAGT ACTCTTTATG
GAAGCGGGAT CGGAAGTGAT GGTGGATTTT AAGGAATACA AACTGGAAAA GGACGCGCTT
TTCTTTATTA AAGACGGACA ATGGTACAAG TGTGCCGGTA AGGGTACGCT ATTATATTAT
AACCGTGACT TCTACTGTAT CCAGATACAT GATGCCGAGG TGGCGTGTGA TGGTTTGTTA
TATAACAATG TATATGACGT ACCGGTTGTG TACCTGGATG GAGAGGCTTC CCGGCAGACC
AGACACATAT TGGAGGAAAT AAAGATGGAG GCGGTCAGTT CGGAAAGCAG TACCGAAGAA
ATGATCAGGA TTTTCCTGAA ACAGCTGATC ATCCGCTCTA CCCGTATGTG GAAGAAAACG
CATGACATGG CCGACAACAG CGTCACACAG GAAGTAGAGT TCCTGCGGAA ATTCAGTCAG
CTGGTAGAAG CACATTATAT TAAACACCAC AACGTAGCCG ACTATGCAGA TATGCTGAGC
ATTACCCCCA AAGCGCTCAG TAAGAAAATA TCCAAGTACA GTGCTAAAAG TCCGAATGAT
ATCATTAAAG ACAGGATCAT CCTGGAAGCA AAACGCCTGC TGATACATAC TGATCTCAGT
GTAAAAGAGA TCGGTTATAA GCTGGGATAT GAAGATCCGG CGTACTTTGT ACGTTTATTT
ACCAATCAGA CGGAGAGTTC TCCCCTGCTC TTCAGAAAAA AATACGCAGA AGGAGAAAAA
GTACAATAA
 
Protein sequence
MENVLKQFFS KKFGYIDFDA DTADDLLYEE YNSFIKVLFM EAGSEVMVDF KEYKLEKDAL 
FFIKDGQWYK CAGKGTLLYY NRDFYCIQIH DAEVACDGLL YNNVYDVPVV YLDGEASRQT
RHILEEIKME AVSSESSTEE MIRIFLKQLI IRSTRMWKKT HDMADNSVTQ EVEFLRKFSQ
LVEAHYIKHH NVADYADMLS ITPKALSKKI SKYSAKSPND IIKDRIILEA KRLLIHTDLS
VKEIGYKLGY EDPAYFVRLF TNQTESSPLL FRKKYAEGEK VQ