Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3339 |
Symbol | |
ID | 8359505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 4103994 |
End bp | 4108586 |
Gene Length | 4593 bp |
Protein Length | 1530 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644965512 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_003123007 |
Protein GI | 256422354 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00211806 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCGATA CTTTTATCAA ACGACCAGTA TTGTCGCTCG TGATCTCCCT GATCATCGTC CTGCTTGGAT TGCTGGCGTT ATTTACATTA CCTGTTACAC AATTCCCGGA TATCGTTCCT CCATCCGTAA CGGTGACCGC CAAATATACC GGCGCCAATG CCGAAGTATG CGCCAAAGCC GTTGCTACAC CACTGGAACG CGCCATCAAT GGTGTGCCGG GTATGACCTA TATGTCTTCT GTTTCCAGTA ATAACGGTAT CACCCTTATA CAGGTCTTCT TCAATGTAGG TACTGACCCC GATCAGGCGG CAGTAAACGT ACAGAACCGC GTAGCGACCA TCATCGATGA ATTGCCGGAA GAAGTGATCA AGGCGGGTGT GACCACCGAA AAAGAGGTCA ATAGTATGCT GCTCTACCTC AACGTAATGA GTGAAGACAG TACGCTCAAC GAACAGTTCA TCTACAACTT CGCTGATATC AACGTCTTAC AGGAACTGAA AAGGATTGAT GGTGTTGGTT TTGCGGAGAT CATGGGTGCA AAGGAATATG CGATGCGCGT ATGGCTTAAA CCTGACCGTA TGCTGGCCTA TAATCTCTCC GCGGATGAAG TGATCAGTGG TATCCGTAAA CAGAACATTG AAGCAGCGCC TGGTAAAACA GGTGAAAGTG CCGATAATGA TCCACAAGTA TTACAATACG TACTCCGCTA TACCGGTAAA TTCTTTGACC CTGCACAATA CGAAAATATC ATCCTCAGAG CAAATCCGGA TGGTTCCGTA TTAAAACTGA AAGATGTGGC GGACGTCACT TTCGGCGCCC TCAGCTACGG CATGGTATCT AAAACAGATG GTAAGCCCTC TGCCTCTATC ATGCTGAAAC AACGTCCCGG CTCCAACGCA CAGGAAGTTA TTGCCAATGT GAAAACACGG ATGGCTGAAT TAAAGGTCAG CACCTTCCCG CCGGGTATGA GCTATAACTT CAACTATGAT GTATCCCGTT TCCTGGACGC TTCAATTCAT GAAGTACTAC GAACATTGAT AGAGGCATTT ATCCTGGTGT TTATCGTTGT ATATCTCTTC CTGCAGGACT TCCGGTCTAC ACTGATCCCG GCGCTGGCTG TGCCTGTAGC ACTGATCGGT ACCCTGTGTT TTATGCAGAT GCTGGGCTTC TCCATCAACC TGCTGACACT GTTCGCACTG GTGCTCGCCA TCGGGATAGT CGTCGATAAT GCCATCGTGG TGGTAGAAGC AGTGCACGTC AAGATGCAGG AAACCCATCT GCCACCATTG GAAGCTACGC TCGCCGCCAT GAGAGAGATC AGTGGAGCAC TGGTAGCAAT CACGCTGGTC ATGTCTGCTG TATTTGTACC TGTGGCATTC CTTTCTGGTC CGGTAGGTGT GTTCTACCGC CAGTTCTCGC TCACACTCGC TATTGCGATT GTGATATCAG GTATCAATGC CGTTACGCTG ACACCCGCAC TGTGTGCTAT TATGCTGCGT CACAACCACG ATGCGGGTAA GAAGAAAAGT TTGCTGCAAC GCTTCTTTGA TAAATTCAAC TTCGGATATA ATAAAACAGA ACGCAGCTAT TCAAAACTGG TCGGTTACAT CGCCGGCAGA AAGATGATCA CGTTTGTACT GATGATCGTC TTCTTTATAG CTACCTGGGG CGCAAGCGCT ATTCTGCCGG GCGGTTTCAT TCCTTCGGAA GACCAGGGTA TGATCTACGT AAACGTAACC ACACCTGCCG GCGCCACCGT GGCCCGTACA GAAGCAGTAC TCGATCAGGT GCAACAAATC GCTGCACGTC TGCCGGAAGG AGAATCTGTG TCTACCCTGG CGGGATTCAG TCTGGTGAAT GATGTTGCTG GTGCTTCTTA CGGTATGGGT ATGATCAACC TGAAGCCCTG GGAAGAGCGT AAACGCTCCG TGAAAGAGAT CATTGCTGCA CTGGAAAAAG AAACCAGGAA TATAGGTGAT GCCAGTATTG AATTCTTCCC GCCTCCCACG GTACCGGGTT TTGGTAACTC AAGTGGTTTC GAACTGCGTG TACTTGACCG TAGCGGTAGT GGCGATCTGA GACAAACGGC GGATGTGACC AATAAGTTTA TCGCCGAACT GAAGAAACGT AAAGAAATCG GTAGTGCATT TACCAGCTTT GACCCCGATT TCCCGCAATA TATGATTCAT GTGGATCAGG CGATGGCCGC CAAGAAAGGC GTAAGTGTAG AAAATGCCAT GTCCACCCTG CAAACCTTGC TGGGTAGTTT TTACGCCTCC AACTTCATCC GTTTCGGACA AATGTATAAA GTCATGGTAC AAGCCTCTCC GCGTTATCGT ACGAAACCGG AAGATGTGAT GCACCTCTAT GTAAAGAATG ATACGGGGGA AATGGTGCCG TTCTCCAACT TTATCCGCAT GGAAAGAGTG TACGGTCCGG AACAGCTGAC CCGTTACAAT ATGTACACCG CGGCCATGAT CAACGGTGAC GCGGCACCGG GCTTTAGTAG TGGCGATGCC ATCAAGGCGA TTGAAGAAGT AGCCGCAAAA TCACTTCCAC GTGGCTTTGC CTTTGAATGG AGTGGTATGA CAAGAGAACA GATCTTATCG GGTAATCAGG CGGTTTATGT CTTTGCCTTG TGTCTGTTAT TCGTATACCT GTTGCTGGCT GCACAGTATG AAAGTTTCCT CTTACCGTTA CCGGTGATAC TTTCCCTGCC GGCAGGTATA TTCGGCGCCT TTATCACCCT GAAAATGGCC GGACTGGAAA ACAACATCTA TGCACAGGTG GCATTAGTCA TGCTGATCGG ATTGTTGGGT AAGAATGCCA TCCTGATCGT GGAGTTTGCC ATCCTGCGTA CCAAACAGGG ACTCTCTGTG CTGGAAGCTG CCAAAGAAGG GGCCGTATCA CGTCTGCGCC CGATCCTGAT GACCTCCTTT GCATTCATTG CCGGTCTGAT CCCTTTATGT ATCGCAAGTG GTGCAGGTGC GATGGGCAAC CGTTCTATCG GTACGGCTGC AGCGGGTGGT ATGTTGATCG GAACGGTGTT CGGCGTACTG ATCATCCCGG GCTTATATGT TTTATTCGCT TCTATTGGCA GTAAAAAGAA GACCAGGCCA CAGACACCAA AACATGCGGT AGGCGCATTA ACAGTGTTAC TGATCGCAGG TCTGCTGACC GGTTGTTATA CGCCATCCAA GGTGATCTTC CCTGATGCAC CTCAGGCACC ACAGGCGTTC AGCAATCCGG TGAACGACAG CAACAAAGTG GCGACCGCCG ATAGCAGCAG TATCGCTACT ATATCTTACA AGCAGTTCTT CACCGATTCC CTGCTGCAAC AATTACTCGA TACCGCCTTG CGTAATAATA CCGACATGCT GATAGCGACA CAGCGGATGG AAACGGCCCG TGCTCAGCTG ATGGCAGCCC GTCGTGCCTG GACGCCGGAA GTAAATGCAG TAGTAAGTGC TGGTGTGGAT CGCTGGGGAG ATTACACACT GAACGGCGTA GGTAACTACG ATACGAACCT CTCACCCAAT ATTGACGATA AACAAAGAAT ACCCGGACCT ACACCTGATT ACTTTGTAGG ATTGCGTAGT TCCTGGGAAA TAGACCTCTG GGGAAAAATG CGAAGCCGTA AAAAGGCGGC CATGCTGCGG TTCATGTCCA GCGAACAGGG ACGCCAGCTG ATAAGCACAC AATTGATCTC GCAGGTGGCC GGCATGTACT ATCAGCTCAT GGTACTGGAT TACGAGCAGC AGGTGATATT GCGGAATATT GCTTTACAGG AGTCTGCACT GGCGACAGTA CAGATACAGC AGGAAGCAGG CCGGGCCACT TTACTCGCGG TACAACAATT CAATGCGCAA TTGCTCAATA CCCGCAGCAT GTCACTGGGA CTCCGGCAAC AGACCCTGGA ACTGGAGAAT CAGCTCAATG CCCTGCTGGG CCGTTTCCCG CAAAGCATCA AACGCGATTC TGCACTGCTG ACAATGCCAC TACCACCGTT TGCCCGAACG GGTGTTCCGG CAGGTATGCT GGCACTCCGG CCAGACATCC GACAGGCGGC ATTGGAACTG GAAGCCGCCA AAGCAGACAT TCATGCGGCG AAAGCATCTT TCCTGCCATC ACTGAATATC ACGCCTTACC TGGGCCTGAA TTCATTTAAC GCGGGCACAC TGTTCAACAC GCCTGCTTCT GTAGCCTATG GAGTACTGGG TGGTTTATCA GCGCCATTGC TGAACAGACA ACAACTGCGT TCGCAGTATA ATATCACGAC AGCTGCTGGT ATGACTGCCT TTTATGACTA CAGACAGCGG GTGATCAATG GCTACCAGGA AGTGATATCA GCATTGGGTA AGATACAGAA CGGACAGGAA GCCTATACGC TGAAGGAAGC AGAGGTAGAA ATGCTGAAGA ACGGTGTTTC CACAGCTAAT GTCCTATACG CCACAGGTTA TGCTAATTAC CTGGAGGTGA TCACTGCACA AAAAAGTGTA CTGGAAGCTG AACTCGCATT GGCCGGTAAT AAAAAAGAAT TATTGTTGGG GACCATCACC CTATATAGGG CGCTGGGCGG AGGAAGACAA TAA
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Protein sequence | MFDTFIKRPV LSLVISLIIV LLGLLALFTL PVTQFPDIVP PSVTVTAKYT GANAEVCAKA VATPLERAIN GVPGMTYMSS VSSNNGITLI QVFFNVGTDP DQAAVNVQNR VATIIDELPE EVIKAGVTTE KEVNSMLLYL NVMSEDSTLN EQFIYNFADI NVLQELKRID GVGFAEIMGA KEYAMRVWLK PDRMLAYNLS ADEVISGIRK QNIEAAPGKT GESADNDPQV LQYVLRYTGK FFDPAQYENI ILRANPDGSV LKLKDVADVT FGALSYGMVS KTDGKPSASI MLKQRPGSNA QEVIANVKTR MAELKVSTFP PGMSYNFNYD VSRFLDASIH EVLRTLIEAF ILVFIVVYLF LQDFRSTLIP ALAVPVALIG TLCFMQMLGF SINLLTLFAL VLAIGIVVDN AIVVVEAVHV KMQETHLPPL EATLAAMREI SGALVAITLV MSAVFVPVAF LSGPVGVFYR QFSLTLAIAI VISGINAVTL TPALCAIMLR HNHDAGKKKS LLQRFFDKFN FGYNKTERSY SKLVGYIAGR KMITFVLMIV FFIATWGASA ILPGGFIPSE DQGMIYVNVT TPAGATVART EAVLDQVQQI AARLPEGESV STLAGFSLVN DVAGASYGMG MINLKPWEER KRSVKEIIAA LEKETRNIGD ASIEFFPPPT VPGFGNSSGF ELRVLDRSGS GDLRQTADVT NKFIAELKKR KEIGSAFTSF DPDFPQYMIH VDQAMAAKKG VSVENAMSTL QTLLGSFYAS NFIRFGQMYK VMVQASPRYR TKPEDVMHLY VKNDTGEMVP FSNFIRMERV YGPEQLTRYN MYTAAMINGD AAPGFSSGDA IKAIEEVAAK SLPRGFAFEW SGMTREQILS GNQAVYVFAL CLLFVYLLLA AQYESFLLPL PVILSLPAGI FGAFITLKMA GLENNIYAQV ALVMLIGLLG KNAILIVEFA ILRTKQGLSV LEAAKEGAVS RLRPILMTSF AFIAGLIPLC IASGAGAMGN RSIGTAAAGG MLIGTVFGVL IIPGLYVLFA SIGSKKKTRP QTPKHAVGAL TVLLIAGLLT GCYTPSKVIF PDAPQAPQAF SNPVNDSNKV ATADSSSIAT ISYKQFFTDS LLQQLLDTAL RNNTDMLIAT QRMETARAQL MAARRAWTPE VNAVVSAGVD RWGDYTLNGV GNYDTNLSPN IDDKQRIPGP TPDYFVGLRS SWEIDLWGKM RSRKKAAMLR FMSSEQGRQL ISTQLISQVA GMYYQLMVLD YEQQVILRNI ALQESALATV QIQQEAGRAT LLAVQQFNAQ LLNTRSMSLG LRQQTLELEN QLNALLGRFP QSIKRDSALL TMPLPPFART GVPAGMLALR PDIRQAALEL EAAKADIHAA KASFLPSLNI TPYLGLNSFN AGTLFNTPAS VAYGVLGGLS APLLNRQQLR SQYNITTAAG MTAFYDYRQR VINGYQEVIS ALGKIQNGQE AYTLKEAEVE MLKNGVSTAN VLYATGYANY LEVITAQKSV LEAELALAGN KKELLLGTIT LYRALGGGRQ
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