Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3307 |
Symbol | |
ID | 8359473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4070331 |
End bp | 4072088 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644965480 |
Product | ABC transporter related |
Protein accession | YP_003122975 |
Protein GI | 256422322 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.233866 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00000537626 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGAAGA CCAACAAGCC CGTAACCAAG ACGGGCAAAG GAAACTCCGG ATTAATGTCT CTACTGCGCC CTTACAGAGG CCAGTTATTC CTACTGATGC TGATGGCCCT GTGTAGTAAC CTGCTGAACC TGGTGCTGCC CTACCTGACG TCCAGAGGAA TCGACGCATA CACCGCCGGC ACGCTCGATC TGAACCGCCT GGTCGTGGAA TTCATCGGCG CTGCTATCGC TATTTTCATC TTTACGTATG TGCAGAGTAT CATTCAGACC TATATGTCTG AAAGGGTAGG CCGCCAGTTA CGTACCGACC TTGCTGCACG TATTTCCCGC CAGGACTACG CCTATATACA GCAGGTCAAT CCTTCCAAAC TACTGACCAA CCTGACCGGC GACGTCGATA GTATCAAACT GTTTGTATCG CAGGCCATCA TCTCTATCGC TTCTTCCGTA TTTATGATTA TCGGTTGTTG CGTGTTGCTG ATCAGCATCG ACTGGAAACT CGGTCTGACC GTTATCTCCG TCGTGCCTTT CATCGCCGTA GCATTCGGCA CGGTGTTGCG GAAGGTAAGA ACGACCTTCA AAAAGAGCAG GGAAGTGGTC GACAAACTGA ATAAGACCAT TAACGAGAGT ATTACCGGTG CGGCCCTGGT CCGCGTGATC AATGCGCAGC AGCAGGAATA TGACCGCTTC ATAGCTCCGA ATGGGGAATC CATGTCCCTG GGTATTGCGG TAGTCCGCCT TTTTGCAGGA CTAGTACCAG TCATCAGTTT CCTGGGTGGT ATGGCAACCC TGGCGACCTT AATGCTGGGT GGTCACTTCG TGATCAACGG AGAAATGACC CTGGGTAATA TCGCCGCCTT CAACAGCTAT ATCGCCATGC TGATCTTCCC GATCATCGTC ATCGGTTTTA TGAGTAACCT GATCGCACAG GCCACCGCTT CCTATCAACG TATCGCAGAG GTACTTCATG CACCCGAATC CGAAGAAAAA GGTACTGTGA CAGATACCCT GAAAGGCGAC CTCCATGTAG ATCATATTGA CCTTTCCCTG GATGGTAAAC CGATCCTGAA AGAGGTCTCT TTCTCCGTAA AAGCAGGTAC GCGTACTGCG ATTATCGGTC CGACAGCCGC CGGTAAAACA CAGTTGCTCA ATATTATTGT CGGTCTGCTG AAACCAAACG GGGGGCATAT CAGTTATGAC AACACGGACC TCTCCGACTA TGATAAAACC GCGCTGTTGC AACAGGTGGG GCTCGTATTC CAGGATAGTA TCGTGTTTAA TATGAGTCTG CGGGAAAACA TTGCTTTCAA TGAGAACGTA AGTGAAGACC TGATGAAACA GGCGATAGCT ACCGCAGAAC TGAAAGAGTT TGTGGCCAGT CTTCCGGACG GACTGGACAC CGTGGTTTCT GAAAGGGGGA ACAGCCTTTC CGGCGGACAA AAACAGCGTA TCATGCTGGC CAGGGCACTG GCGATCAATC CGCAGATCCT GCTGCTGGAT GATTTTACCG CCAGGGTAGA TGCGAACACC GAACAACGTA TCCTGGACAA TGTGCAGGAA AACTATCCGC ACCTGACGCT CATATCTGTG ACACAAAAAA TAGCTTCTGT AGCACATTTT GACCAGATAA TCCTGCTGAT GGATGGTGAA GTGGTGGCCA CAGGCACACA TCAGGAGCTG ATGCAGACAT GTCCCGAATA CGTACAGATC TTTAATTCCC AACGTAGTAC CAGCAATTAT GAATTACAAC CTGAATAA
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Protein sequence | MKKTNKPVTK TGKGNSGLMS LLRPYRGQLF LLMLMALCSN LLNLVLPYLT SRGIDAYTAG TLDLNRLVVE FIGAAIAIFI FTYVQSIIQT YMSERVGRQL RTDLAARISR QDYAYIQQVN PSKLLTNLTG DVDSIKLFVS QAIISIASSV FMIIGCCVLL ISIDWKLGLT VISVVPFIAV AFGTVLRKVR TTFKKSREVV DKLNKTINES ITGAALVRVI NAQQQEYDRF IAPNGESMSL GIAVVRLFAG LVPVISFLGG MATLATLMLG GHFVINGEMT LGNIAAFNSY IAMLIFPIIV IGFMSNLIAQ ATASYQRIAE VLHAPESEEK GTVTDTLKGD LHVDHIDLSL DGKPILKEVS FSVKAGTRTA IIGPTAAGKT QLLNIIVGLL KPNGGHISYD NTDLSDYDKT ALLQQVGLVF QDSIVFNMSL RENIAFNENV SEDLMKQAIA TAELKEFVAS LPDGLDTVVS ERGNSLSGGQ KQRIMLARAL AINPQILLLD DFTARVDANT EQRILDNVQE NYPHLTLISV TQKIASVAHF DQIILLMDGE VVATGTHQEL MQTCPEYVQI FNSQRSTSNY ELQPE
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