| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3272 |
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| Symbol | |
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| ID | 8359438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4030759 |
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| End bp | 4034046 |
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| Gene Length | 3288 bp |
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| Protein Length | 1095 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644965445 |
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| Product | NHL repeat containing protein |
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| Protein accession | YP_003122940 |
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| Protein GI | 256422287 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.333117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0421668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAGA AACACCTGTC TTTATTACCA CTACTTCTTT TAGTAGGTCA CTTTGCCATC
GCCCAACAAT CACCTGCTGC CATACCTGTT CCGTTTAATC TCAAACAAGC CGGATATGTT
ACTTTGGTGA TTGAAAACAG TGATGGTACG CGTGTACGTA ACCTGATATC AGAAACCTAC
TTCCCTGCCG GCGCTAACAC CGTGCAATGG GATGGGCTGG ACGATCTGGG CAGAGATGCC
GATGGCGCCA AACATGGCGT CTATAATGTA CCGGGCAAAA TGGTCGCTCC GGGTCAATAT
ACCGTCCGCG GACTCGTCAG GGGCGCTATT CATGCACATT ATGAAATGGC CACTTATTCT
CCCGGTACGC CTCCCTGGAG AACGGAAGAT CATACCGGCG CCTGGCTCGC TAACCATACC
CCTCCGCAAG CCGCTTTATT TGTACCCGCA AAAGCTTCCC CTTCCCGCCA ACCGGCGGTC
TTACTCGGCT GTTATGTAAC AGAAGGGCCG GATGGACTGG CCTGGATAGA TATGAGCGGA
CGTAAACGCG GCGGACGTAG CTGGGTGGGT GGCGCATGGA CAGCCGCTCC TTTTATTGCA
GTGGATAATG GTCCCAAAGC ACTACCAGGC AACGACGTGT ATGTGGTATC TGCCTGGGAA
ACAGATAAAC AGTCCGGCGT AGCCGAACTA CGCCTCAATG CCCTGAGTGT AGGGAAAAAG
AATGATTATA ATGTTAAACA GATCGTAAAA CGCTCATTAG GTGCAGTACC GCTGGAACAG
GTAAAAGAGA TGATCACCGG CTTTGCAGTG AACAATGGTA TTGCACTGAT CAGTATTGCG
GGTAAAAATC GTATACTGAT TGCCGATATT GCTAAAAGCA GGTTGACCGA CAGTATAAAA
GCGAATGCCC CCACCGGCAT GTGTTATGAT AAACAAGGCA GATTATTGTT ACTCGTAGGC
AATCAGCTGA TCCGCTTTTC CGGTACATTA CCGGATGATA AAGGACAGGT ACTGATAGCT
AACGGACTTG AAGCCCCTGT CGCACTTACG CTCGACAATA GCGGTAAGAT CTATATCAGC
GATCGTGGGA AGAGTCATAC CGTTAAGGTA TTTTCTCCCG AAGGAAAGTT CGTCCGCCAG
ATTGGTACAC CAGGCGCCCC TGCTGCCGGT CCTTATGATC CGCAGCATAT GAACAATCCT
GCCGGTATTA CCATCGATGC GGAACAACAG TTATGGGTTA CTGAAAATGA CTACCTGCCC
AAGCGGGTCA GTGTCTGGTC CCTGGATGGA AAACTGATCC GTGCGTTTTA TGGTCCACCG
AAATATGGCG GTGGCGGTAC CCTCGATCCA CAGGATAAAA CCCGTTTCTA CTATACTGAA
GAAAGCAAAG GCGCGATGGA ATTTGCGCTG AACTGGCAAA CGGGCACTTC TACCGTAAAG
CAGGTCTATT ATCGTCCGGA TGCAGCTGAT ATGCCACTGG CGTTCCGTAG TGCAGCACCA
GAGACACCGC TTTACTATAA CGGACAACAA TACTTCACCA ACTGTTATAA CAGTAGTCCG
ACAAATGGCT GGACCACTGC TTTCCTGTTC GTCAAACGTA ATGGTGTAGC TGTTCCTGTA
GCTGCTATGG GTCAGGCCGC ACAATGGGAT CTGCTGAAAA GTGACGCCTT CCGTTCCCGA
TGGCCACAAG GCGTAGATCT GAATGCAAAA GGCAGCTCCT CCCAGGCATT TTTTATCTGG
CAGGATCAGA ACGGAGATGG CCGTGCACAG GCAGGGGAAG TACAATACCA GAAAGGCAAT
AGTGGTGGTG TTACAGTGAT GCCGGATCTT TCTTTCTGCA TCGCACGTAT CAATGATAAA
GCGATGAAAT TTGCCGTTAC GGGTGTATCC AAGGCAGGTG TACCGATGTA CGATATTACA
AAAGGGAAAG TAATGGCAGA TGGCGTCCTG ACACCAGCGT CTTCGGGTGG CGATCAGTTG
ATGGAAGGAC CTGACGGATG GAGTGTGATC ACTTTAGGGG TGAAGCCCTA TTCGCAGCTA
TCCCTCAGCG GCGTTAAAAA CGGCGTCCCT GTATGGAGTT ACCCCGATCT CTGGCCCGGT
TTACATGCTT CGCATAATGC ACCGGAAGCC GACAGACCCG GACAGCTCAT TGGCACGACC
CGTCTCTTAG GTGGTTTCTT CAGCGTAAAA GGATCAGCTG CTGGTCCCTT ATGGGCCATC
AATGGTAACC ACGGGAATGT GTATGTATTT ACGGCGGATG GTTTATTTGT CGCCTCTCTC
TTTGAAAATA TGCGCAGCGG TACCCAATGG CGTATGCCAG GCGGTAAGCG TAATATGTCC
CTCGACAGTA TTACACTGGG TGAAGAAAAT TTCTGGCCGG GTATTACCGC TACGGATGAT
GGGAAGGTAT ACCTGGTGGA TGGTGCGCGC AGTGCTGTAG TAAGACTGGA CGGACTGGAA
AGCATCAGTC GTTTATCTGA TACAAAGATT GCAGTGAATC AGTCATCGCT GAACCGTAGT
CTGGCTGTTA TGTCTGCCGC ATCTGCTACA CAACAGCAGG CAGGCGGTCC ACGTGTCCTG
GAGGTAAATA TCAGTACACA AAAGCCTGTT GTTGACGGTA AACTGAATGA ATGGGCAAAG
GCATCCTGGG CAGATATCGA TAAGCGGGGT GTGAAAGCTA ATTTCAATTC GAACTCAAAA
CCATATGATG TCAGCGGCGC CCTGATGGTG TCCAACGGCC GATTATATGC CGCCTTCCGT
ACCGGCAATG CACACCTGGC AGATAATTCC GGAGAAATGC CTATGGCGCC TTTTAAAACC
GGTGGTGCGC TGGATATCAT GATCGGTTCT TCCGATACAA AGGCAGATCC TGCAAGACGT
ACGGCTGTCG CAGGCGATTA CCGCCTGCTC GTCAGCGTAG TAGATGGTAA ACCACAGGCT
TTACTTTACA AAGCCATCGT ACCAGGCACT AAACAGGATG ATAAAGTGCC TTTCTCCTCT
CCTTCCCGGA CCATCACCTT TGATAAGGTG GATAATATCA GCAGTCAGCT GCAATTTGCC
GGTTCTGAGG GCAATTACGA GCTTTCTTTG CCGCTGACGG CACTTGGTAT TCAGGCTGGC
AATGGAACGC AAATAAAGGG CGATATAGGC ATTTTAAGAG GCAGTAACGG GGAAACCACC
TCCCGTCTCT ACTGGAGCAA TAAAGCAACC GGTATTACGG CGGACGTTCC TTCCGAAGCC
ATACTCGCCC CAAATCTCTG GGGCACCTTC TTATTCAAAG GGAAATAA
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| Protein sequence | MTKKHLSLLP LLLLVGHFAI AQQSPAAIPV PFNLKQAGYV TLVIENSDGT RVRNLISETY
FPAGANTVQW DGLDDLGRDA DGAKHGVYNV PGKMVAPGQY TVRGLVRGAI HAHYEMATYS
PGTPPWRTED HTGAWLANHT PPQAALFVPA KASPSRQPAV LLGCYVTEGP DGLAWIDMSG
RKRGGRSWVG GAWTAAPFIA VDNGPKALPG NDVYVVSAWE TDKQSGVAEL RLNALSVGKK
NDYNVKQIVK RSLGAVPLEQ VKEMITGFAV NNGIALISIA GKNRILIADI AKSRLTDSIK
ANAPTGMCYD KQGRLLLLVG NQLIRFSGTL PDDKGQVLIA NGLEAPVALT LDNSGKIYIS
DRGKSHTVKV FSPEGKFVRQ IGTPGAPAAG PYDPQHMNNP AGITIDAEQQ LWVTENDYLP
KRVSVWSLDG KLIRAFYGPP KYGGGGTLDP QDKTRFYYTE ESKGAMEFAL NWQTGTSTVK
QVYYRPDAAD MPLAFRSAAP ETPLYYNGQQ YFTNCYNSSP TNGWTTAFLF VKRNGVAVPV
AAMGQAAQWD LLKSDAFRSR WPQGVDLNAK GSSSQAFFIW QDQNGDGRAQ AGEVQYQKGN
SGGVTVMPDL SFCIARINDK AMKFAVTGVS KAGVPMYDIT KGKVMADGVL TPASSGGDQL
MEGPDGWSVI TLGVKPYSQL SLSGVKNGVP VWSYPDLWPG LHASHNAPEA DRPGQLIGTT
RLLGGFFSVK GSAAGPLWAI NGNHGNVYVF TADGLFVASL FENMRSGTQW RMPGGKRNMS
LDSITLGEEN FWPGITATDD GKVYLVDGAR SAVVRLDGLE SISRLSDTKI AVNQSSLNRS
LAVMSAASAT QQQAGGPRVL EVNISTQKPV VDGKLNEWAK ASWADIDKRG VKANFNSNSK
PYDVSGALMV SNGRLYAAFR TGNAHLADNS GEMPMAPFKT GGALDIMIGS SDTKADPARR
TAVAGDYRLL VSVVDGKPQA LLYKAIVPGT KQDDKVPFSS PSRTITFDKV DNISSQLQFA
GSEGNYELSL PLTALGIQAG NGTQIKGDIG ILRGSNGETT SRLYWSNKAT GITADVPSEA
ILAPNLWGTF LFKGK
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