| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3258 |
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| Symbol | |
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| ID | 8359424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4009958 |
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| End bp | 4012510 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644965431 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_003122926 |
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| Protein GI | 256422273 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACATA GAATGTATTT GTATAACCTC TCCGGGAACG AGGTTACAGC AAAATCGTCT
GCAACAACAA TGCCCCTTGC CAGTTACGGC GTAAACGATA CGGATGTGCG TATGATGATG
GAATGGAAGT ATGAATTCCC GCTTTTATTT CATCCCCTCT TTGACGATAC AACCGCTATT
GCTCCACCGG TCTATAATGG CAGTGAAGGG GGCTTATATG CGCCTGCTGC TCCCGGTATT
GAAGCCTTGA AGGCTTTGTA TGATTTTATC GAAAAGCATC AGGACACGCT GATTGATGAC
ATTGCTGCTT TCCAGGAAAC GAAAACAAAG ATCTTCACCT GGTTCAGCAG GAAAGTCATC
CATCCGGCCT TCCACCTGGA TGCCTGGGAT GTATTCAATA TGAGTGATGA ATCGCATGAG
ACACAGGCTG AAGAACTGAT CGCTCTCATT CATGCAAACA ATAAGGCCCT TGCAGCCGCT
ATTGCTGCGG ATAATCCCGC ATTGCTGGAT AGCTGTCCTT ATTTCCAGGA ACAGGGTAAT
TATTTTAAAA CGTTCAGGCA GTTACTGAAT GAGCCATTGT ATCAATTTGG CTGGAGTATA
CTGGCATCAG GTATGTCCGG CGATGAAGAC GAGCTCCAGG TCTTCAGCGA AGGAAATCTG
AAAGGGCTGA AAGATACAGA CGGGAATGAA GTAGTAGCGG CTATCTATGA GGAGATATAC
GGCTTTCCTT ATGGTGCAGA CCTGGCCGTG GTTATGAAAA ACGGTAAAGC CGGTTATATC
GATAAATCGG GCAGAGAAGT AATGCCCTGC GTATTTGATG ATGCATATGA TTTCGAAGAT
GGATATGCGG CGGTTGTAGC TCATGGTAAG TTTGGACTGA TAGACACGGA AGGTAATTTT
AAACTTCCCG CAATCTATGA GGACGGACAT GTATTATCAG CCACAGCGAT CGCAGTACAG
CAGGATGGAT TATGGGGGAT TATTGATATC GACGGACAGG TACTGCTCCC CTTCCGGGAT
GTGAAAGAGA TCATTGCGGA ACAAACGTAC ACATTCACTT ACTACAAACT GGTAGGGCAT
CAGCAGGAAG AAAGCTGGTA TACCCATGCA TTCAAACCAC TGGTCATCGG CCCCGTATCA
GGTATCGAAT GCTTTGGAGA ATATTATATC GTTACAAAGG ACGGGCGTGC AACTCTAATA
GATGCCCAGG GCAATGTGTT ACTGGGAGAA GGCTATCTGC ATATACGTGC TGAAGAGCTG
TTAAATGCGC TCATAGTACA ATCAGCAGCA GGTACTGGTC TGTATATCCC TGAAAAAGGC
TGGATACTCC CCTGTGTGTA TGAGGCAATC TTTCCGCTGG AAGACGCGAA TCCGGAAGAA
GATGGTACCG TCTATGTCAT CGTGAAGAAA AACAAGGAGG CCGGTTTATT TGGCGTAGGC
GCTAATAGTC GCTGGATCAA AGCACCGGGT TATCAGCAGT TCAGGTGGTT GAAAAAGGAT
TTTCTGAGCT ACCAGGAAAA CAAGTTATGG GGATGTATGG ATGCCACAGG GCGCTTACTG
ACAGAAGCGA TATATACGGC TATCAACAGC AAATTTGGCT ATCTGCCATA TGGACTTGCA
CTCGGTTTTC ATAGTAAGGG TATCGATGTC ATCGATGAAG ATGGCAGTAC CCGTCTATTT
CAATCTGTAG AGGCCCAGAA TGAGCTCAAT GACTATCCGC AGGCATGTTA CTCCAAAACA
GAGATACAAC AGCTGAAACA AGTCGCAAAA TCAGCAGAAA AGGCATTGAC CTTTTTTGAA
GAAGCACAGG AATATAAAGA GCAGGGGCAG TATGAAAAAG CATTAGACCT GTTCCGCCAG
TCCGCTGAAC TGGGCAATCC GGCAGCACTC ACCAGCATCG GTCATACGTA TGAAGTAGCC
TATGATGATT TCGACAAGGC ATTTGCATAT TATTCGCAGG CAGCGCAGCT GGGAGAAGTA
TACGCCATGT CCAACCTCGG CCTTTCGTAT CAGTATGGAA GAGGAACAGC GGTGGATATT
CCTGCGGCGA TTGATTGGTT TCAGAAAGCG GCCGACCGTA AACATGGGGA TGCGTATCTC
TACCTGGGAG ATATTTATTA TCATTCGACG TTTAATGTAG TGGATTATGA TAAGGCGCTC
TTTAACTATT CAAAAGCGCA TTTATTACAG GAGCAGCCGG TGGCGGATGC AATAGGACAT
ATCTACGAAG TGAAGCAGAA CTATGAACAG GCGGTTTATT ACTACGGTGT GGCGGTAGAA
AACGGGAATG CTTTTGCGAA ATGGCGGCTT GCCTGTCTTT ATATGGATGG CAATGGGGTA
GATACAGACC TGGAGAAGGC ATTGCTGTTA TTACACGAGG CTGTTGCAGA ACAGGCGGAA
GCGCATCTCG ACCTGGTTGC CATTTACATG TCGGCCGATT ATTACGATGA AGATAAAGCA
GGCGCGCATC TGGCAGCCGC AGAAGAGGCG GAGGTACCTG ATGTTGCAAC TTATAAAGCC
CGCTATGAGA TATTATGGAA GAGACGGCGC TGA
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| Protein sequence | MSHRMYLYNL SGNEVTAKSS ATTMPLASYG VNDTDVRMMM EWKYEFPLLF HPLFDDTTAI
APPVYNGSEG GLYAPAAPGI EALKALYDFI EKHQDTLIDD IAAFQETKTK IFTWFSRKVI
HPAFHLDAWD VFNMSDESHE TQAEELIALI HANNKALAAA IAADNPALLD SCPYFQEQGN
YFKTFRQLLN EPLYQFGWSI LASGMSGDED ELQVFSEGNL KGLKDTDGNE VVAAIYEEIY
GFPYGADLAV VMKNGKAGYI DKSGREVMPC VFDDAYDFED GYAAVVAHGK FGLIDTEGNF
KLPAIYEDGH VLSATAIAVQ QDGLWGIIDI DGQVLLPFRD VKEIIAEQTY TFTYYKLVGH
QQEESWYTHA FKPLVIGPVS GIECFGEYYI VTKDGRATLI DAQGNVLLGE GYLHIRAEEL
LNALIVQSAA GTGLYIPEKG WILPCVYEAI FPLEDANPEE DGTVYVIVKK NKEAGLFGVG
ANSRWIKAPG YQQFRWLKKD FLSYQENKLW GCMDATGRLL TEAIYTAINS KFGYLPYGLA
LGFHSKGIDV IDEDGSTRLF QSVEAQNELN DYPQACYSKT EIQQLKQVAK SAEKALTFFE
EAQEYKEQGQ YEKALDLFRQ SAELGNPAAL TSIGHTYEVA YDDFDKAFAY YSQAAQLGEV
YAMSNLGLSY QYGRGTAVDI PAAIDWFQKA ADRKHGDAYL YLGDIYYHST FNVVDYDKAL
FNYSKAHLLQ EQPVADAIGH IYEVKQNYEQ AVYYYGVAVE NGNAFAKWRL ACLYMDGNGV
DTDLEKALLL LHEAVAEQAE AHLDLVAIYM SADYYDEDKA GAHLAAAEEA EVPDVATYKA
RYEILWKRRR
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