| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3242 |
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| Symbol | |
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| ID | 8359407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3993510 |
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| End bp | 3995483 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644965414 |
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| Product | DNA ligase D |
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| Protein accession | YP_003122910 |
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| Protein GI | 256422257 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.99209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGATT ATATAGAACC CATGCTTTGT ACGCCCCTGA AAACGCTTCC ACCAGGGGAT
GAATATATTT ACGAAATAAA ATGGGACGGC TACCGGGCTA TATCCTCCGT ACGCAAGAAA
AAAGCCCGCA TCCACTCCCG GAAAGGACTC AACTACAGCG CCCGCTACCC GCTGGTAGCC
GAAGCCCTGG CCGCTATTGG CCATGACTGC ATAATAGACG GTGAAATAGT AGTGCCTGGT
AAAGACGGCA AACCCAGCTT CAATGCCGTG CAACGCTACA ACGGCAAGCG ATCGGCCATT
TACTATTACC TTTTTGACCT GCTATGGCTG GATGGGCAAG ACCTTACGGG CCTGCCGCTT
ACCCAGCGCC AGGAGCTGCT GCGGATGCTG ATAAAAGAAG GCCCGGTTTT AAAGCTAAGC
ACGGTTTACA CTGATGGCGG GGCGCTGTTT AATCGAATGC AGGAGCAGGG TATGGAAGGC
GTAGTAGGCA AGAAAGCCGA CAGCGCCTAC GCCTCCGGCA AAAGAGGTGA CGCCTGGATA
AAAGTGAAGC TCAGTAAGCG GCAGGAGTTT GTTATTGTAG GCTATACCGA AGCCGACTCA
CCCAGCCGGT TCCGTTCCCT CATGTTCGGC GAATACCTTC CTACTGGGGA GTTGGTATAC
GTACACCACT CCGGAGGGGG CTGGTCAGCC GAAGAAGGCA AGGCCCTCTT CGCGCGGTTA
AAGCAACTCG AAATAACAAA GAAACCTTTC ATTAACACTG CCAAAACCGA AACGCGTCAA
CACTTTGTAA AACCGCAACT GGTAGCTGAA TTTGACCTAT CCGGCTTTTA CACCCCGTCT
GGTACCATTC GCCATCCGGC ACCCTTCAAA GGACTGCGGG AAGACAAAGA CGCGAAAGAA
GTTATACGTG AAGAAGAAGG CGATCCCATA ATTTCGCCTG TGGAGGCGCC TGGTGCTTCG
AGAGCCACCT ATTTGAACAC AGACAGCAAC TGGAAAGCCG TAGACAAAGA ACAGGAAGGC
GCGGAATGGA TGGACTTTAC CATGCGCAAA TGCACCATTC GTGTTCACGA CCTCGAACGT
GAACTGTGGA CCGATGTACC AAAGGGCAAG CTGCTGGTAT ATTACAACCG CCTATCGCAC
CTGATACTGC CCTACATCAA AGACCGGCCC CAATCGCTCC ACCTGAAGCT GACCCATGCC
GGAGCACCAC GCTTCTTTAT TAAAGACATG GAGGGCCGTC AGCCGGAATG TGCTACCGTA
TTCACCGATA CACGCCGTAC AAAGAAAGCC GGAAAGCGCG ACCAGATCGA CTACCTGGTA
GCCAACAACG CCGAGACGCT GCTGTTTATG GTGGATACCG GCTGTATAGA TATCAACCCC
TGGGCTTCCC GGATACAACA GCCGGAGTAT CCGGATTACT TGTGGCTTGA TCTTGATCCT
ACGAGTCCGG AAAAGCTGAA AGGTGATGCG CTGATAAAAG CAGAGAACCG TGGTTTTGCT
GATGCGATAG AGGTGGCCCG CGCTGTAAAG GAAGTGCTGG ATAAGCACCG GCTGAAGAGT
TTTGTGAAAA CTTCGGGTAA AACGGGGATA CATATTTATA TACCCTGCGA GGGGTTTGGT
TTTCGTCAGG CCCGGTTACT AGCAAGCGTG CTGGCATCGG AGGTGCATGA CCTGGTGCCG
GAGATCAGTA CGGTGAATAC AAATATCAAC CAGCGGGGTT CCCGCGTGTA CATCGATGCG
GGGCAGAATG ATTACGCGGA TACGCTGGCC GCGCCTTATT GCATACGGCC ATATCATCAG
CCGCTGGTAA GCACGCCGCT CTCGTGGCGG GAAGTGAATG CTTCGCTGGA CCGATGGGCG
TTTACGGTGG ATACGATTGA ACGTCGACTG GATAGGAAAG GGGATCTGTG GGGGGATTTG
GGGGATGGGA AGGTGAAGGC GGCGAATGGG AAGGTGTTGA GGAGGATGTT TTAA
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| Protein sequence | MPDYIEPMLC TPLKTLPPGD EYIYEIKWDG YRAISSVRKK KARIHSRKGL NYSARYPLVA
EALAAIGHDC IIDGEIVVPG KDGKPSFNAV QRYNGKRSAI YYYLFDLLWL DGQDLTGLPL
TQRQELLRML IKEGPVLKLS TVYTDGGALF NRMQEQGMEG VVGKKADSAY ASGKRGDAWI
KVKLSKRQEF VIVGYTEADS PSRFRSLMFG EYLPTGELVY VHHSGGGWSA EEGKALFARL
KQLEITKKPF INTAKTETRQ HFVKPQLVAE FDLSGFYTPS GTIRHPAPFK GLREDKDAKE
VIREEEGDPI ISPVEAPGAS RATYLNTDSN WKAVDKEQEG AEWMDFTMRK CTIRVHDLER
ELWTDVPKGK LLVYYNRLSH LILPYIKDRP QSLHLKLTHA GAPRFFIKDM EGRQPECATV
FTDTRRTKKA GKRDQIDYLV ANNAETLLFM VDTGCIDINP WASRIQQPEY PDYLWLDLDP
TSPEKLKGDA LIKAENRGFA DAIEVARAVK EVLDKHRLKS FVKTSGKTGI HIYIPCEGFG
FRQARLLASV LASEVHDLVP EISTVNTNIN QRGSRVYIDA GQNDYADTLA APYCIRPYHQ
PLVSTPLSWR EVNASLDRWA FTVDTIERRL DRKGDLWGDL GDGKVKAANG KVLRRMF
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