Gene Cpin_3194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3194 
Symbol 
ID8359359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3938954 
End bp3941671 
Gene Length2718 bp 
Protein Length905 aa 
Translation table11 
GC content47% 
IMG OID644965366 
Productglycoside hydrolase family 2 sugar binding 
Protein accessionYP_003122862 
Protein GI256422209 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3250] Beta-galactosidase/beta-glucuronidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.163194 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.106396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAAAA AAGAATGTAA ATGTATTTTG TTGTCACTGT CGTTGGGTGT TATATTAACT 
AATGTACAGG GACAGGCTAA TGGGAACTGG CAGGCGCCTA AGGATGCTAT CGCAACGCGC
TGGACGAAGA TGGTGAACCC TTCTAATGTG TTGCCGGAAT ATCCCCGACC GCAATTGGTA
CGCAATAATT GGACGAACCT TAATGGCCTT TGGGAATATG CCGTAACGCA GCAAAGTGTA
GGAACTCCTG ATAATTTTTC AGGCAATATC CTGGTGCCCT ATCCCTTTGA ATCAGCTTTA
TCAGGTGTAA AGAAAAGATT GCAACCGGAT CAATGGCTTT GGTATAAACG CAGCTTCACC
AAACCTGTTC TAAAGCCAGG TGAGCGCCTG CTGCTGCATT TTGGTGCAGT GGATTTTGAA
GCGGTTGTTT TTATAAATGA TAAGGAGCTG GGAAGCCATA AGGGAGGATA CCAGCACTTT
TCTATCGATG TAACAGATGC TTTAACTACA GGGAAAAACA ACCTGGTGGT GAGAGTGTGG
GATCCAACCG ACAAAGGGCC TAACCCGCAT GGTAAGCAGG TGCTGAATCC GGAAGGTATT
ATGTATACCC CCAGCAGCGG CATTTGGCAA ACCGTGTGGC TGGAGGTGGT ACCGCAGGTG
TTTGTGCAAT CGTTGAAGAT AACGCCGGAT GTAGATAAGC ATCAGGTGAG GGTCGATTTT
GCCGTAAACA AGGATGGAAA ATCACCTGAT CTTTTTGCCG CAGGCTCCCC TGCGGCAACC
ACCGGCCTTT CGGATTATAC GGTTGAATTG AATGTGAAGA AAGGCACAAC CGTTGTTACA
TCGGTTAAGC AGCCCTTAGA GAAATCGGCC TATATCACCT TACAGAATGC CCGGCTTTGG
AGCCCTGACG ATCCTTTCTT ATATGATCTC CAGGTAAAGC TATGGAAAGG AGGCAAACTG
GTAGATGAGG TTACCAGTTA CTTTGGTATG CGAAAGGTGG ATATACAGAA GGATAAGCAG
GGTGTAGACC GTATTTTCTT AAACAACCAG TACACCTATA ACCTGGGAAC CTTGGATCAG
GGCTTTTGGC CGGATGGATT GTATACAGCC CCTACAGACG CTGCCCTGAA ATTTGATATT
GAGGCGGCAA AGGCGATGGG TTTTAATACC ATTCGTAAGC ATATAAAGAT AGAACCAGAC
CGCTGGTATT ATTATGCAGA CAAGCTGGGA ATGCTTGTTT GGCAGGATAT GGTAAACCCC
GGTAATGATG CCCCCGCCGG CCATAGCCAG TTTGAACAGG AAAATAAGGA GAACGTAGCC
CAGTTATACA ACCATCCTTC TATTGTTACC TGGGTTTTGT TCAACGAAAA GTGGGGACAG
TATGATCAGG AACGACTCAC CAACTGGTTT AAGGCGCAAG ACCCTACCCG CTTGATCAAC
GGCCATTCCG GTGAAATGCT GTATGTGAAT GATCAGCTCC GTAGCCCATC TCCTAATGCC
TGGGTAGCGG CTGACATGAC GGATGTTCAC TCCTACCCCT TCCCCCGTAA TGCTCCGGCA
GAACCAGGCA AGGCACGTGT GCTGGGTGAA TTTGGTGGTA TTGGCGTGCC TGTAGAAGGG
CATTTATGGA GCGATCTTCA GGCTGGCTGG GGCTATGACG GCGTTGTTAG TCCTTCTGTA
ATGCAACAGC AATATAAGCA GATGGCTGAT TCGCTGAAGG TGCTGGAGCG CTTAGGTTTA
AGCGCTTCTA TCTATACGCA ACCCTTTGAT GTGGAATCTG AACAAAATGG TATAATAACG
TACGATAGAG CCATCATTAA GCTTCCGGTA GCAACTATTA GAAGCATAAA TGCGCAGGTA
TGGCCAGCTA CTAAAAACTT TCTGCTGGCT ACCAAAGGAT TTTCGGCTTC CGTAGCAGAT
ACGGTATCAA AATCGTACGC GGTACGATTG AAAGAATACC AGCAAGGCAA AAAGGATTCT
GCCTTTTTAA GGGCGCTCAC CGTATTGGCA GATGCGCAAA AAGACCCGGC AATGGTGGAA
AAGCTCGCCG CGGAACATAT TAGTCAGATG AAAAATCCGC TAAGTGAGGT GAACCTGAAA
TTCATTATGC GGTTTACCAA CACTACCCGC GATCCCGGAT TTGCGGTATT ATACAAAAAC
GTTCAAAAGG TAAACGAGAT ACTTGGCAAA GACGAAGCGG AAAGTAAGAT TACCGCCGCT
ATAGAAAAGG ACGAAATCAA TCCCTACCTG CCAACAGACG GAAAGCCCGA TTGGACGAGC
ATTGAAAAGC GCGCCATAAC AAAGTATGGA GATTTGGGCA AAGAGATCGT TTGGCAAACC
AAGGTGTTCT ATGCTGCCAA TCACCAGGAT TGGGATGGCT TTGGCCTGGC GCTGCGGCCC
TGGTTTGAGA AGTATGGCTC TAAACGGAAG TGGATCACCT CCGGCACCAT TAACGCGCTG
GGCTGGGCAG CATTTGAGAA TACCACCAAT AGAAATACAT TGGAAGCAGC GCTCGTTCTA
ACCTCACATG GAGTACAGCA GGAGGAGCAA ACCAACCTCT TGGACACGCA TGCGAACCTG
TTGTATAAAT TAGGCAAAAA ACAAGAAGCC CTTCACTGGG AAGAAAAAGC CTTAACGGCC
TCTAACGGCG ATGCCGAAAT TCAAAATAAT TATGAAAAGA TGAAACGCGA CGAGCCTACC
TGGCCTCGCG TGAATTAA
 
Protein sequence
MFKKECKCIL LSLSLGVILT NVQGQANGNW QAPKDAIATR WTKMVNPSNV LPEYPRPQLV 
RNNWTNLNGL WEYAVTQQSV GTPDNFSGNI LVPYPFESAL SGVKKRLQPD QWLWYKRSFT
KPVLKPGERL LLHFGAVDFE AVVFINDKEL GSHKGGYQHF SIDVTDALTT GKNNLVVRVW
DPTDKGPNPH GKQVLNPEGI MYTPSSGIWQ TVWLEVVPQV FVQSLKITPD VDKHQVRVDF
AVNKDGKSPD LFAAGSPAAT TGLSDYTVEL NVKKGTTVVT SVKQPLEKSA YITLQNARLW
SPDDPFLYDL QVKLWKGGKL VDEVTSYFGM RKVDIQKDKQ GVDRIFLNNQ YTYNLGTLDQ
GFWPDGLYTA PTDAALKFDI EAAKAMGFNT IRKHIKIEPD RWYYYADKLG MLVWQDMVNP
GNDAPAGHSQ FEQENKENVA QLYNHPSIVT WVLFNEKWGQ YDQERLTNWF KAQDPTRLIN
GHSGEMLYVN DQLRSPSPNA WVAADMTDVH SYPFPRNAPA EPGKARVLGE FGGIGVPVEG
HLWSDLQAGW GYDGVVSPSV MQQQYKQMAD SLKVLERLGL SASIYTQPFD VESEQNGIIT
YDRAIIKLPV ATIRSINAQV WPATKNFLLA TKGFSASVAD TVSKSYAVRL KEYQQGKKDS
AFLRALTVLA DAQKDPAMVE KLAAEHISQM KNPLSEVNLK FIMRFTNTTR DPGFAVLYKN
VQKVNEILGK DEAESKITAA IEKDEINPYL PTDGKPDWTS IEKRAITKYG DLGKEIVWQT
KVFYAANHQD WDGFGLALRP WFEKYGSKRK WITSGTINAL GWAAFENTTN RNTLEAALVL
TSHGVQQEEQ TNLLDTHANL LYKLGKKQEA LHWEEKALTA SNGDAEIQNN YEKMKRDEPT
WPRVN