Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3194 |
Symbol | |
ID | 8359359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3938954 |
End bp | 3941671 |
Gene Length | 2718 bp |
Protein Length | 905 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644965366 |
Product | glycoside hydrolase family 2 sugar binding |
Protein accession | YP_003122862 |
Protein GI | 256422209 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.163194 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.106396 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAAAA AAGAATGTAA ATGTATTTTG TTGTCACTGT CGTTGGGTGT TATATTAACT AATGTACAGG GACAGGCTAA TGGGAACTGG CAGGCGCCTA AGGATGCTAT CGCAACGCGC TGGACGAAGA TGGTGAACCC TTCTAATGTG TTGCCGGAAT ATCCCCGACC GCAATTGGTA CGCAATAATT GGACGAACCT TAATGGCCTT TGGGAATATG CCGTAACGCA GCAAAGTGTA GGAACTCCTG ATAATTTTTC AGGCAATATC CTGGTGCCCT ATCCCTTTGA ATCAGCTTTA TCAGGTGTAA AGAAAAGATT GCAACCGGAT CAATGGCTTT GGTATAAACG CAGCTTCACC AAACCTGTTC TAAAGCCAGG TGAGCGCCTG CTGCTGCATT TTGGTGCAGT GGATTTTGAA GCGGTTGTTT TTATAAATGA TAAGGAGCTG GGAAGCCATA AGGGAGGATA CCAGCACTTT TCTATCGATG TAACAGATGC TTTAACTACA GGGAAAAACA ACCTGGTGGT GAGAGTGTGG GATCCAACCG ACAAAGGGCC TAACCCGCAT GGTAAGCAGG TGCTGAATCC GGAAGGTATT ATGTATACCC CCAGCAGCGG CATTTGGCAA ACCGTGTGGC TGGAGGTGGT ACCGCAGGTG TTTGTGCAAT CGTTGAAGAT AACGCCGGAT GTAGATAAGC ATCAGGTGAG GGTCGATTTT GCCGTAAACA AGGATGGAAA ATCACCTGAT CTTTTTGCCG CAGGCTCCCC TGCGGCAACC ACCGGCCTTT CGGATTATAC GGTTGAATTG AATGTGAAGA AAGGCACAAC CGTTGTTACA TCGGTTAAGC AGCCCTTAGA GAAATCGGCC TATATCACCT TACAGAATGC CCGGCTTTGG AGCCCTGACG ATCCTTTCTT ATATGATCTC CAGGTAAAGC TATGGAAAGG AGGCAAACTG GTAGATGAGG TTACCAGTTA CTTTGGTATG CGAAAGGTGG ATATACAGAA GGATAAGCAG GGTGTAGACC GTATTTTCTT AAACAACCAG TACACCTATA ACCTGGGAAC CTTGGATCAG GGCTTTTGGC CGGATGGATT GTATACAGCC CCTACAGACG CTGCCCTGAA ATTTGATATT GAGGCGGCAA AGGCGATGGG TTTTAATACC ATTCGTAAGC ATATAAAGAT AGAACCAGAC CGCTGGTATT ATTATGCAGA CAAGCTGGGA ATGCTTGTTT GGCAGGATAT GGTAAACCCC GGTAATGATG CCCCCGCCGG CCATAGCCAG TTTGAACAGG AAAATAAGGA GAACGTAGCC CAGTTATACA ACCATCCTTC TATTGTTACC TGGGTTTTGT TCAACGAAAA GTGGGGACAG TATGATCAGG AACGACTCAC CAACTGGTTT AAGGCGCAAG ACCCTACCCG CTTGATCAAC GGCCATTCCG GTGAAATGCT GTATGTGAAT GATCAGCTCC GTAGCCCATC TCCTAATGCC TGGGTAGCGG CTGACATGAC GGATGTTCAC TCCTACCCCT TCCCCCGTAA TGCTCCGGCA GAACCAGGCA AGGCACGTGT GCTGGGTGAA TTTGGTGGTA TTGGCGTGCC TGTAGAAGGG CATTTATGGA GCGATCTTCA GGCTGGCTGG GGCTATGACG GCGTTGTTAG TCCTTCTGTA ATGCAACAGC AATATAAGCA GATGGCTGAT TCGCTGAAGG TGCTGGAGCG CTTAGGTTTA AGCGCTTCTA TCTATACGCA ACCCTTTGAT GTGGAATCTG AACAAAATGG TATAATAACG TACGATAGAG CCATCATTAA GCTTCCGGTA GCAACTATTA GAAGCATAAA TGCGCAGGTA TGGCCAGCTA CTAAAAACTT TCTGCTGGCT ACCAAAGGAT TTTCGGCTTC CGTAGCAGAT ACGGTATCAA AATCGTACGC GGTACGATTG AAAGAATACC AGCAAGGCAA AAAGGATTCT GCCTTTTTAA GGGCGCTCAC CGTATTGGCA GATGCGCAAA AAGACCCGGC AATGGTGGAA AAGCTCGCCG CGGAACATAT TAGTCAGATG AAAAATCCGC TAAGTGAGGT GAACCTGAAA TTCATTATGC GGTTTACCAA CACTACCCGC GATCCCGGAT TTGCGGTATT ATACAAAAAC GTTCAAAAGG TAAACGAGAT ACTTGGCAAA GACGAAGCGG AAAGTAAGAT TACCGCCGCT ATAGAAAAGG ACGAAATCAA TCCCTACCTG CCAACAGACG GAAAGCCCGA TTGGACGAGC ATTGAAAAGC GCGCCATAAC AAAGTATGGA GATTTGGGCA AAGAGATCGT TTGGCAAACC AAGGTGTTCT ATGCTGCCAA TCACCAGGAT TGGGATGGCT TTGGCCTGGC GCTGCGGCCC TGGTTTGAGA AGTATGGCTC TAAACGGAAG TGGATCACCT CCGGCACCAT TAACGCGCTG GGCTGGGCAG CATTTGAGAA TACCACCAAT AGAAATACAT TGGAAGCAGC GCTCGTTCTA ACCTCACATG GAGTACAGCA GGAGGAGCAA ACCAACCTCT TGGACACGCA TGCGAACCTG TTGTATAAAT TAGGCAAAAA ACAAGAAGCC CTTCACTGGG AAGAAAAAGC CTTAACGGCC TCTAACGGCG ATGCCGAAAT TCAAAATAAT TATGAAAAGA TGAAACGCGA CGAGCCTACC TGGCCTCGCG TGAATTAA
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Protein sequence | MFKKECKCIL LSLSLGVILT NVQGQANGNW QAPKDAIATR WTKMVNPSNV LPEYPRPQLV RNNWTNLNGL WEYAVTQQSV GTPDNFSGNI LVPYPFESAL SGVKKRLQPD QWLWYKRSFT KPVLKPGERL LLHFGAVDFE AVVFINDKEL GSHKGGYQHF SIDVTDALTT GKNNLVVRVW DPTDKGPNPH GKQVLNPEGI MYTPSSGIWQ TVWLEVVPQV FVQSLKITPD VDKHQVRVDF AVNKDGKSPD LFAAGSPAAT TGLSDYTVEL NVKKGTTVVT SVKQPLEKSA YITLQNARLW SPDDPFLYDL QVKLWKGGKL VDEVTSYFGM RKVDIQKDKQ GVDRIFLNNQ YTYNLGTLDQ GFWPDGLYTA PTDAALKFDI EAAKAMGFNT IRKHIKIEPD RWYYYADKLG MLVWQDMVNP GNDAPAGHSQ FEQENKENVA QLYNHPSIVT WVLFNEKWGQ YDQERLTNWF KAQDPTRLIN GHSGEMLYVN DQLRSPSPNA WVAADMTDVH SYPFPRNAPA EPGKARVLGE FGGIGVPVEG HLWSDLQAGW GYDGVVSPSV MQQQYKQMAD SLKVLERLGL SASIYTQPFD VESEQNGIIT YDRAIIKLPV ATIRSINAQV WPATKNFLLA TKGFSASVAD TVSKSYAVRL KEYQQGKKDS AFLRALTVLA DAQKDPAMVE KLAAEHISQM KNPLSEVNLK FIMRFTNTTR DPGFAVLYKN VQKVNEILGK DEAESKITAA IEKDEINPYL PTDGKPDWTS IEKRAITKYG DLGKEIVWQT KVFYAANHQD WDGFGLALRP WFEKYGSKRK WITSGTINAL GWAAFENTTN RNTLEAALVL TSHGVQQEEQ TNLLDTHANL LYKLGKKQEA LHWEEKALTA SNGDAEIQNN YEKMKRDEPT WPRVN
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