| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3121 |
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| Symbol | |
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| ID | 8359286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3840246 |
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| End bp | 3840788 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644965294 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003122790 |
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| Protein GI | 256422137 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.191132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.766027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCATACA GCGTATTGGA GGACAATGAA CTATTGAACA GGGTCAGGCT TTCTGACGCA
AAAGCCTTCG ACGAAATTTA CCTTCGCTAC TGGCGTAAAT TATATGCATT GGCGTTTTAC
CATCTGAAAG ATAGTGAGGC AGCAGAAGAT ATTGTCCAGG AGATATTTAC AAGCCTCTGG
GCTGCCCGCG AACGCTCCGA TATTAAATAC CTGTATACCT ATCTCGCTAC GGCTACCAAA
TATGCCGTTT TTCATCATTT TGCCCAGCCA TCCAACAGTA CTGCTTCCCT GGAAGAGCTC
TTGTCATTGC CGGTAGAGCA GCCTTCCGCC GAAAGCAGAT TGTTACAGGA TGAGATCAAC
CGGGAAATTA ACCGTTTACC GGAAAAATGT CGCCTCGTGT TCCACTACAG CAGGGAAGAA
GGACTGGGAA ATAAAAATAT CTCCGAGAAA CTGAACATCT CCACAAAAGC GGTCGAAAAG
CATATTACGA GGGCGCTCCG TCAGTTACGT GTACAACTGA AACACATGGT CTGGTTCCTC
TGA
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| Protein sequence | MSYSVLEDNE LLNRVRLSDA KAFDEIYLRY WRKLYALAFY HLKDSEAAED IVQEIFTSLW
AARERSDIKY LYTYLATATK YAVFHHFAQP SNSTASLEEL LSLPVEQPSA ESRLLQDEIN
REINRLPEKC RLVFHYSREE GLGNKNISEK LNISTKAVEK HITRALRQLR VQLKHMVWFL
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