| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3101 |
|---|
| Symbol | |
|---|
| ID | 8359266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3820807 |
|---|
| End bp | 3823920 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644965275 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003122771 |
|---|
| Protein GI | 256422118 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.377571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.147743 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGGA CCTTATTAAT TTTCTTCCTA TGTACCTTAT CCGTATCTGT GTTGAGCGCA
CAGGATAAGC CTTACATTTT TGACTCTTAT GGGGTGAATG AGGGTTTGTC TCAGAATTCT
GTCTATGATA TCCTGGAAGA TAATCAGGGC TTTATGTGGA TCGCTACACA TGATGGCATT
AACAGGTTCG ACGGATATGG GTTCAATGAA TACAGGTTCA ATCCTAGTTT ACAGGAACGG
GCCGGACAGG GGAAAGGAAA CCTGGTAGTC CGGAATAACA ATGGGGGACG TGCATTGATT
AACCGCTTTG CCCTGAAAGG GTACAAAGGG TATTCCCTAT ACCGTAACAG AAGGCACCAG
CTGATGCTGA CGCATAATTA CGGTATCAGT GTCTATGACG AGTATAAAAA CTCCTTTGAG
ACGGTGCTGG AAGACACGAT GTATGAAAAC AACGGGGAGC GCGACAGTGG CAATAAGTTC
AGAATACTCG GTGAAGACTC CTTAACTAAC AGCATGTGGG TATGGCGCCC TTCCAAAGGC
CTCTATATAC TCGACGATTC CACTTATGTC AAAAAAAGGG TGATTCTCTA CCCAAAGGCG
ATGTTACAAA GGGGTGTTTC CGCCAATTCC ATGTATAAGG ACGGTAATAC CATCTGGATG
AACTTTGAGG CAGGTGAGCT GCTGGCGATG AATACCAAAA ACCTCCGCTT AACCACTTAT
TGTCTGCCCG GGATCACTTC TCACACAGTA CTTAAAAACC TCAATAAAGA CTCTCTGATC
ATTGCCTGCC GTGGACATCT GATCATTTTC AATAAAAAGC AGAACAAATA CACTGATATA
CCTTTCGATC AGCGTGATCC TAAGGATGCT AATTTCATTC CTTTATGCCT GGAGCTGGAC
CAGAACGGTA ATATCTGGAT CGGTGGTACG GACGGCATTA TGATTTACAA TGTAAAACGC
AATGAGATCG TTACCCGTAT TGTCAGCTTT AACGGTTCTG AAACACGGTC CTGGAATGTA
GTGACCTATC TGTACAGAGA TGCTGCGGAT AACATGTGGG TAGGTACAGA TGGAGATGGC
ATCAAAAAAT ATTCTCCTAA TAAGAAAGTA TTCAATCTTT ATCGTTCGCC GGCTACCACG
CACAATATGG TCAGGGCTGT TTATAAGCAC GACGATGGTA AGTTGTATGT AGGACTGCTG
AACGACGGAC TGGATATCTA CGAAAAAGGA GGCAAGTTCC TGGAGCGCAT ACCAAACGAT
GAACGCAAAG GGGTATTCCC TGCGAAAAAT CTGAATGCGA TCTGCAGGGA AGATTTTGAA
CACCTCTGGT TCCATTTTTC TGACATGCAC ATTGGATTGT TCAATGTACA TACCCGAAAA
TTTGAGGACC TGACGAAATA TGTGAGCGCA CTGGGGCTGC CGCCACAGGA AGACATCTAT
CCGTTCCTGT TCAAGCGGAC CAGCGGCGAG GTGTACTTCA ACTACGGCCG TTATCTGTTA
CAGATCATGC CGGGAGAGCA TGGAGGATAT AAAGTGGCAA TCGTACACGA ATTCCCGGAT
GAGATTCTGA CTACCTATTA CGAAGACCTG ATGGGGAATA AATATGTGGG TACCAAAGTG
GCTGCATACG TGAAGCGGAC GGGCAGTGCA GGCTGGGAGA TGATCACCCT GCCGCAGGGT
ACGATCGTGA AATCGATCAG CAAAAGAGCC GGTAAGGAAT TATTACTGGC GACTTCCAAA
GGGCTGTTTG TACTGGATGA AAATAACCAC AGAAAGAAAC ATTACAATAG TTACGACTAT
CCTGCATTGA TCAATGATTA TCTGTATGGC GTATTGCTGG ATGAGAAGGA CAAAATATGG
GTCAGCCATA ACAAAGGGCT TTCACAGATT GATCCTTCAG GTGACGAGAT CACGACCTAC
AATCATGAGG ATGGTTTGCA GTCAAATGAG TTCAATACAG GCGCTTTTTT CAAGTCGGTG
GACGGAGAAC TCTTCTTTGG TGGTATAAGG GGCTCAAATG GCTTCTATCC TAAAGATTTT
AAGAAGAATA CTTCCAAGCC GAAAGTGGTG ATCATGCGGA TGGAGGTGCT GGATAAACCT
TATGAGTCAG ATACGGCTTT ATCGCTGTTG CGCAGAATAG AATTGCCTTA CAATCACAAT
ACCATCGCTA TTGAGTTTGT GCCACTGGAA TATACAAATC CGCTGAAGAA CAAGGTGCAG
TACAAGCTGG ATGGAGCGGA TGAAGACTGG GTACAGGCAG GTGCATTCAG GATGGCGCGT
TACACGAATC TGCGTCCGGG TACCTATACT TTCAATGTGC GGGCATCCAA TAACGATGAT
ATTCTGAACT CGACGCCTAC CACATTGGAA ATCACGATCA GGATACCATT CTGGCAATCA
TTGTGGTTCA GGTTCCTGTT GCTGCTGTTA TTATTGGGTG TTGCTTATTA TTTCTCTACG
CTTTATCTTG ATTACAAGAT CCGTCATGAG AAACTGAAAC TGGAGAAAGA ACAGGCGGTG
GACCAGGAAA GGGCGAGAAT TTCCAGTGAT ATGCATGATG ACCTGGGATC GGGATTGTCT
ACGATACGTC TGCTGAGTGA GATCGCGAAG CGGAAGATCA CAGATACATC GCAGACGAAG
GAGCTGGAAC GTATATCAGA GGCGGCAGGA GAGCTGGTAG ACAAAATGAG CGAGATCATC
TGGGCGATGA ATTCTTCGAA TGACTCACTG GAGAACCTGA TTGCTTATAT GCGCAGCTTT
GCGGCCGATT TTCTGGAACA TGCGCATATC ACCCACCAGT TCTATATTCC GGAAAGTATC
CCCAATATTA AACTAAGTGG GGGTACCAGG CGTAATATAT ATCTGGCGGT AAAGGAATCC
TTACATAATG TGGTGAAACA TGCACAGGCA TCTGAGGTAG TAATACAAAT ACAGATGCAT
AAGAACATGA CGATTATGAT TAAAGATAAT GGCAAAGGCT TTGATCAGGA GAAAGTAAGA
TTGTTTGGAA ACGGATTAAA GAATATTCAG AAGAGGATGC AGGCCGTCGG TGGAAACGCT
GATATCAAGT CGCATCATGG TACGATAGTT TTGCTAGATA TCCCATTAAT TTAA
|
|---|
| Protein sequence | MTRTLLIFFL CTLSVSVLSA QDKPYIFDSY GVNEGLSQNS VYDILEDNQG FMWIATHDGI
NRFDGYGFNE YRFNPSLQER AGQGKGNLVV RNNNGGRALI NRFALKGYKG YSLYRNRRHQ
LMLTHNYGIS VYDEYKNSFE TVLEDTMYEN NGERDSGNKF RILGEDSLTN SMWVWRPSKG
LYILDDSTYV KKRVILYPKA MLQRGVSANS MYKDGNTIWM NFEAGELLAM NTKNLRLTTY
CLPGITSHTV LKNLNKDSLI IACRGHLIIF NKKQNKYTDI PFDQRDPKDA NFIPLCLELD
QNGNIWIGGT DGIMIYNVKR NEIVTRIVSF NGSETRSWNV VTYLYRDAAD NMWVGTDGDG
IKKYSPNKKV FNLYRSPATT HNMVRAVYKH DDGKLYVGLL NDGLDIYEKG GKFLERIPND
ERKGVFPAKN LNAICREDFE HLWFHFSDMH IGLFNVHTRK FEDLTKYVSA LGLPPQEDIY
PFLFKRTSGE VYFNYGRYLL QIMPGEHGGY KVAIVHEFPD EILTTYYEDL MGNKYVGTKV
AAYVKRTGSA GWEMITLPQG TIVKSISKRA GKELLLATSK GLFVLDENNH RKKHYNSYDY
PALINDYLYG VLLDEKDKIW VSHNKGLSQI DPSGDEITTY NHEDGLQSNE FNTGAFFKSV
DGELFFGGIR GSNGFYPKDF KKNTSKPKVV IMRMEVLDKP YESDTALSLL RRIELPYNHN
TIAIEFVPLE YTNPLKNKVQ YKLDGADEDW VQAGAFRMAR YTNLRPGTYT FNVRASNNDD
ILNSTPTTLE ITIRIPFWQS LWFRFLLLLL LLGVAYYFST LYLDYKIRHE KLKLEKEQAV
DQERARISSD MHDDLGSGLS TIRLLSEIAK RKITDTSQTK ELERISEAAG ELVDKMSEII
WAMNSSNDSL ENLIAYMRSF AADFLEHAHI THQFYIPESI PNIKLSGGTR RNIYLAVKES
LHNVVKHAQA SEVVIQIQMH KNMTIMIKDN GKGFDQEKVR LFGNGLKNIQ KRMQAVGGNA
DIKSHHGTIV LLDIPLI
|
|---|
| |