| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3083 |
|---|
| Symbol | |
|---|
| ID | 8359248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3801414 |
|---|
| End bp | 3802145 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644965257 |
|---|
| Product | LmbE family protein |
|---|
| Protein accession | YP_003122753 |
|---|
| Protein GI | 256422100 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.110434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0323718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG ACATACTGGC TATCGCTGCA CATCCTGATG ACGTGGAGCT GGCCTGTGCA
GGTACCCTGA TGGTACATGC CGCGCAGGGG ATGAAGGTTG GGGTACTGGA CCTGACAAAG
GGAGAACTCG GCACTCGTGG TACACCTGAA ATAAGAGCGG CAGAGGCAGC GGATGCTGCA
GTAGTGATGG GATTATCGGT GAGAGATAAC CTCGGACTGG CAGACGGCTT CTTTCGGAAT
GATACCGAAG AACAGATCAA ACTGATCGCT GCGATCCGCA AATACCAGCC GGATATTGTG
CTGGCCAATG CATTTGAGGA CCGTCACCCG GATCATGGAA GAGCAGCCCG TCTGATAGCA
GACAGCTGTT TCCTGGCAGG TCTGAGACGT ATCGAAACAT TTGATAATGG CGAACCGCAG
GCAGCCTGGA GACCTAAACA GGTATTTCAC TTCCTGCAGG ACCGTTTTGA GGAGCCCGAT
TTTGTGATAG ACGTATCGTC TGTCATAGAG CGTAAAAAAG AGGCGATCAG GGCCTACAGG
ACCCAGTTCC TGGCTGCGGC AGGTGATAGT GAACCGAAGA CCTACATTTC TTCTTCCGCG
TTCTTTGATG GCGTAATAGC TAGAGACGCT ACATTCGGCA AAATGGTTGG GGTATCTTAT
GCGGAAGGAT TCAAAACAGT TAAGATGTTG GGAATCAGTA GCTTTAGAGA TTTAATTAAT
AATGTAACGT GA
|
|---|
| Protein sequence | MKLDILAIAA HPDDVELACA GTLMVHAAQG MKVGVLDLTK GELGTRGTPE IRAAEAADAA
VVMGLSVRDN LGLADGFFRN DTEEQIKLIA AIRKYQPDIV LANAFEDRHP DHGRAARLIA
DSCFLAGLRR IETFDNGEPQ AAWRPKQVFH FLQDRFEEPD FVIDVSSVIE RKKEAIRAYR
TQFLAAAGDS EPKTYISSSA FFDGVIARDA TFGKMVGVSY AEGFKTVKML GISSFRDLIN
NVT
|
|---|
| |