Gene Cpin_3051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3051 
Symbol 
ID8359216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3765960 
End bp3766889 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content46% 
IMG OID644965229 
ProductABC transporter related 
Protein accessionYP_003122725 
Protein GI256422072 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACATA CTATCGTAAA AGTTGAAAAC TTATCTCACC GGTACGCGTC ACAGTGGGCG 
GTAAGAGATA TAAATTTTGA GATCAGCAGC CAGGGAGTAG TCGGACTATT AGGGTCTAAC
GGAGCTGGTA AATCTACCAC AATGAATATC ATTTGTGGGG TGCTGAAGCA GTCTAAAGGG
GAAGTATTTA TCAATGGCGT CAACCTGAAA GAAAATCCTG TAGCTGCTAA ACGCAATATT
GGCTTTATGC CGCAGAAACT GCCCCTGTAT CTCGACTTTA CGGTAGAGGA ATACCTGACC
TACTGTGCTG AACTGAGAAT GGTAGAAAAA ACACAGGTAA AGAAAGCGGT GGCCGATGCA
TTGGAAAGAT GCGGCGTAGC GCATTTCAGA GAGCGTCTCT TACGTAACCT CTCCGGTGGT
TATCAGCAAC GTGTGGGTAT CGCACAGGCG ATCGTACACA ACCCGAAGTT TGTCGTACTG
GACGAACCTA CCAATGGTCT CGACCCGAAT CAGATAGTGG AAGTACGTAA CCTGATCAAA
CAGATCGCAT TGGACCGTGC AGTTCTGCTT TCTACGCACA TTCTCACAGA GGTACAGGCT
ACCTGCAGAG AGATCAAAAT GATCGAAGAA GGACAGATGG TATTCTCCGG TTCACTGGAA
ATGTTTGATA ACTACATAGA ACCCAATACA CTTGTAGTCA CGCTGGATAC ACCTCCTGTA
AGTGATGCAC TGATGAGCGT GGAAGGTATC AGATCCGTAG AGCAGATTGC TCCTTTCAGA
TACCGTCTGG GTTATGATGG TGAAAAGAAA ACACCACAAC GCTTTGCTGC TGCCAGTGTG
AGCCAGGATT GGGGACTGAT GGAACTGATC ATTGAAAAGA GCTCACTTGA TGAGGTATTT
GCCAGACTGT CAAAGAAAAA CAATAAGTAA
 
Protein sequence
MEHTIVKVEN LSHRYASQWA VRDINFEISS QGVVGLLGSN GAGKSTTMNI ICGVLKQSKG 
EVFINGVNLK ENPVAAKRNI GFMPQKLPLY LDFTVEEYLT YCAELRMVEK TQVKKAVADA
LERCGVAHFR ERLLRNLSGG YQQRVGIAQA IVHNPKFVVL DEPTNGLDPN QIVEVRNLIK
QIALDRAVLL STHILTEVQA TCREIKMIEE GQMVFSGSLE MFDNYIEPNT LVVTLDTPPV
SDALMSVEGI RSVEQIAPFR YRLGYDGEKK TPQRFAAASV SQDWGLMELI IEKSSLDEVF
ARLSKKNNK