| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3047 |
|---|
| Symbol | |
|---|
| ID | 8359212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3758399 |
|---|
| End bp | 3759592 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644965225 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003122721 |
|---|
| Protein GI | 256422068 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAA AGAATCATTA TATAGCCGCA TTAATCGCTA AATATCTTGA TAACAGCCTG
AATGAAGCTG AGGAGATTGA GCTGACAGCA TGGATAAATG CTGAAGCCCA CCACCGTGAT
CTGTTTGAAC AGATGACTGA TCCCCAGCAG CTCACCACGC ATCTGCAGCA GTTCTATACC
TATGATTCAG ACAAAATAAT CCGTAAGATT AGCCAGCATA TACCTGAATT TAATGACGAG
CCTGTACGCA TACGCCCTGT TTATCTGAGA AAATGGGGTT GGGCAGCAGC GATCGCCATG
CTTTTAGTAG GTGGTTCTTA TTACTGGGCA TCACGTCTCC ACAACAAACC GGCTGTAATA
GCGTCAGTAC CGGTCAACAT TGAGCCTGGT AAACAAGGAG CCATTCTTAC ACTGTCAGAT
GGCCGGGAAG TAGTCCTGGA TAGTCTGCGC AGTGGTATAA TAGCTAATCA GAGCGGTGCA
TCCATCGTCC TCTCCGAAGG ACAGTTAGTA TACGATCCGA CCACAACCGG AAATATGGAT
GCTCAGTATA ATATAATGAC TACACCCGCA GGCAGACAAT TCCAGGTAAC ACTGCCCGAC
GGGACTAATG TATGGCTGAA TGCGGCCAGT TCTATCAGGT TTCCTACCAG CTTCGTTGGG
AATGAAAGAA GGGTAGAAAT AACCGGAGAG GTATATTTTG ATGTCATAAA GAATGCAAAT
AAGCCTTTTA TTGTAGCAGT TAAAGACAAG ATTGATATAG AAGTCTTAGG TACTTCTTTT
AATGTGAATG CATACGAGAA CGAGCGCGCC ATCCGTGCCA CACTTATTAA TGGTAGCATA
AGGGTAGGAG TGCCATCAAC CGATCATAAA AAGGCTGTAA CACTACAGCA AGGCCAACAG
GCGGGGATAA TAAATAATAA GATCACCATA ACAGATAATC AGGATCCGGA GAAAATATTA
GCCTGGAAAA ATGGATTGTT CAACTTTGAC GGCGCCAACC TTGAAGAAGT CATGCGCGAG
TTGGAACGAT GGTATGACAT AGAAGTGGTA TATGAGAATG GTATTCCGAA TGCAGATAAG
TTTATCGGGG AAATGACCAG GCAGATTGCT TTAACAGACT TATTAGATAT TTTAAAAAGA
TTTCAGGTCG ACTTTAGGGT GGAGGGACGC AAGCTCATCG TAATAAACAA GTAA
|
|---|
| Protein sequence | MTEKNHYIAA LIAKYLDNSL NEAEEIELTA WINAEAHHRD LFEQMTDPQQ LTTHLQQFYT
YDSDKIIRKI SQHIPEFNDE PVRIRPVYLR KWGWAAAIAM LLVGGSYYWA SRLHNKPAVI
ASVPVNIEPG KQGAILTLSD GREVVLDSLR SGIIANQSGA SIVLSEGQLV YDPTTTGNMD
AQYNIMTTPA GRQFQVTLPD GTNVWLNAAS SIRFPTSFVG NERRVEITGE VYFDVIKNAN
KPFIVAVKDK IDIEVLGTSF NVNAYENERA IRATLINGSI RVGVPSTDHK KAVTLQQGQQ
AGIINNKITI TDNQDPEKIL AWKNGLFNFD GANLEEVMRE LERWYDIEVV YENGIPNADK
FIGEMTRQIA LTDLLDILKR FQVDFRVEGR KLIVINK
|
|---|
| |