| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3017 |
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| Symbol | |
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| ID | 8359181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 3734637 |
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| End bp | 3736046 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644965197 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003122694 |
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| Protein GI | 256422041 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.757667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCATC ATAAAAAAAT ATATCTGCTT CTTTTCTTCA TGGCTTTGGC AGGAGCCTGC
AGGGTATCAA AAGACCTGCC AGATCAACGA CCGGAGACAC CGTCCGCTTT TCGTAACGGC
AATGATACAG ACACTTCCAG CATTGCAGGT ATTCCCTGGA AGTCTTTTTT TACGGATAAG
GTGCTACAGG AGTTGATCGA TAGTACTTTA GCAAGGAACT TCGATATGCA GTCAGCACTT
AAAAACCTGG AGCAATCGCA ATTAGTGCTG CAACAGTCTA AATGGAACAA TGTTCCTGTC
GTGGGCTTAA ACGTTACGGC TTCCACTACG AATCCATCAA ACAATAGTTT AAACGGTTTG
ACGCTTGGGC AGTTTTTAGG GACAGATCAC CTGGAAGACT ACTCCGCAAA TCTAAGCGTT
AGCTGGGAAG CGGACATATG GGGTAAAATC AGGAATACAA ACAGACTGGC CCTGGCTTCC
TACCTGCAAT CCCAGGAAGC CCGTAAAGTT CTGCAGACGG GCCTGATTGC AGCTGTATCA
CAAGGTTATT TCAATCTTTT GATGCTGGAT GCGCAGCTGA ATATTGTCGA AAAAAATCTT
ACACTCAACG ACAGTACAGT GCTTATCGTT CAGTTACAAT ACGAAGCCGG CCAGGTCACC
TATCTGGCGG TTCAGCAAGC GATTGCCCAA CGTCAGCTGT CAGCGGGCTT GCTACCTCAA
TTGGAGCAGG CAATTATTAT CCAGGAAAAT GCAATTCGCT TCTTAAGCGG ACAACTTCCA
GACAAGATAG ATCGAAACAG CTTGCTTGAA GACATCACCT TTCCTTCGAT CTTATCTGCA
GGTATCCCAT CTGAAATGAT CAGCCGGAGA CCTGATGTTA AAAGCAGCGA ATTTGAGCTG
ATGATAGCTA ATTCACGGGT TGGTATTGCA AAAGCTCAAA TGTACCCTTC ATTACGGATA
ACTGCTTCCG GCGGCGTCAA CTCACTCAGG GCAAGTGATT GGTTTAATAT ACCGGGCTCC
ATCTTTGGTG TCGTAGGTGG AGGTGTACTG CAACCCTTAC TTCAGCATAA AGAACTAAGT
ACGCAATACC GGGTAGCTCA GCTAGAACGC GAGAAAACCG TTTTACTTTT CAGGCAGACG
GTATTGAAAG CTGTAGGTGA GGTATCGGAT GCATTGGCGA GTATCGAAAA ACTAAAGGTA
AGGGAAAGCG TTACGGCTGA ACGTGTAAAA ACCCTGCAGG AAGCTACGAT AAATGCAAAT
GCGCTTTTCC AAAACGGCAT GGCCAACTAT CTGGAGGTGA TAACTGCTCA AAGTAATGTG
TTACAATGTG AACTTGACCT TGCAGCCATT AAATGTGCTG AATTAACAGC GATATCAGAC
TTATACCGGA GTCTTGGCGG TGGTATTTAG
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| Protein sequence | MNHHKKIYLL LFFMALAGAC RVSKDLPDQR PETPSAFRNG NDTDTSSIAG IPWKSFFTDK
VLQELIDSTL ARNFDMQSAL KNLEQSQLVL QQSKWNNVPV VGLNVTASTT NPSNNSLNGL
TLGQFLGTDH LEDYSANLSV SWEADIWGKI RNTNRLALAS YLQSQEARKV LQTGLIAAVS
QGYFNLLMLD AQLNIVEKNL TLNDSTVLIV QLQYEAGQVT YLAVQQAIAQ RQLSAGLLPQ
LEQAIIIQEN AIRFLSGQLP DKIDRNSLLE DITFPSILSA GIPSEMISRR PDVKSSEFEL
MIANSRVGIA KAQMYPSLRI TASGGVNSLR ASDWFNIPGS IFGVVGGGVL QPLLQHKELS
TQYRVAQLER EKTVLLFRQT VLKAVGEVSD ALASIEKLKV RESVTAERVK TLQEATINAN
ALFQNGMANY LEVITAQSNV LQCELDLAAI KCAELTAISD LYRSLGGGI
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