| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3011 |
|---|
| Symbol | |
|---|
| ID | 8359175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3725503 |
|---|
| End bp | 3726903 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644965191 |
|---|
| Product | peptidase C14 caspase catalytic subunit p20 |
|---|
| Protein accession | YP_003122688 |
|---|
| Protein GI | 256422035 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.912982 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA CCCGCTATGC CATATTGATA GGCATTAATG ATTATGAAAA TTTCCCTTTA
CGATATTGTT CTAACGATGT AGTCGAATTG AAAAAGCGAT TGCTTAGTAA TTGTCTTTAT
GCCAACGAGA ACATATTTGA AATAGTTAGC ACTAAACAGG CACCAGTCGC TGATGTTTAC
GGAGAGCTTA ATCGAACCAT AAATTTGATT AGCCAATTGT TTACTGGCCA AAATGACAGT
ATTTTTTTTT ATTTTTCTGG ACATGGAAAA TTTAAAGAAG GTCAAACATT TTTAGAATTT
CATCAAAACC TAGTGTCTAC CCAAACCATC TACGAGCGAT TAAGTGAGTT AGTACCTGCT
AATCAGGTGT ATGTATTGGA TGCATGCCAT TCAGGTTTTG GAATAGAATT TAAGTCTGGT
GAAGATGCGG CAATGACGGC TTACTATCAA CAAAGATATA TCGCAGGATC GGAAGGATTT
TTTTTCCTCT GTTCCTGTAA ACAAGATGAA AGATCACAGG CTTTCCCTCA GTATAAAAAT
GGGGTTTTTA CAAAGTATAT TCTTGAAGCA ATTGATAACC CTAGCATTTA TGACAACGAG
AATAATTACT TGACTCTTCC TGTAATTCAC GAATATGCGT TAAAAAAAAT ATTACTTACT
GGTAAATATG AGCAAACTCC TTTTATGCAA ATGCAGGCAA GTGGCTATTA TCCATTTGCT
GTTAGAAAGC GGGAAGAATA TCAGATTTGT GAATCTCTAA TCGAAACCTT TAGCAAGGAG
GCTGAAATCG AAGATTTTTT TAGACTAGAG GATTTAAACC TTTCCAAGGA TTTGCGTAGA
GATCTGTTTC ACTTTTGTTC AGAACTAATC TTGAACCTCT TTGGGCATGG CTACAGTCCC
AATGCTCAAA TCAGTGTAGC CAGAAATACT ATCTCTATCT ATGATTATAG TGAAAAGAGC
TTTAATCCAT TTACAGCAGA AGCGACAACA GATGGAAAAG GCATCAAAAT TATGCGCGAC
TTCATGAAAA GGTATAAAGG TGTTTGTGAA TTTAAATATG AGGAAGGCAA TCCAAATGTT
ACGACACTTG CCTTTTCTGA TGAGATTGGA GAGTTTAAAT ATAATGCCCC ATGTTTTCTT
CTAATTGAGA AAGAATCTTT ATATTATCCT TCAAATCTCA ATAATATCAA AATAGATAAA
ACTTGTAAAG AACTCTTAAT TGATGCGACT AATGCATATG TATGGGGCAG TATGGCCGGT
CTATTTTTGG ATTATTTAAT GCGACGTACA GAAGATAGTC AGGCGTTTAT TATATTAAAA
TTAGATAAAA ACGATTTCAC AAAAGATTAT TTAGTTTCTA TGGTAAAGGA AGGTCCTTAT
CCAAGAATAA TGATTGTATA G
|
|---|
| Protein sequence | MSETRYAILI GINDYENFPL RYCSNDVVEL KKRLLSNCLY ANENIFEIVS TKQAPVADVY
GELNRTINLI SQLFTGQNDS IFFYFSGHGK FKEGQTFLEF HQNLVSTQTI YERLSELVPA
NQVYVLDACH SGFGIEFKSG EDAAMTAYYQ QRYIAGSEGF FFLCSCKQDE RSQAFPQYKN
GVFTKYILEA IDNPSIYDNE NNYLTLPVIH EYALKKILLT GKYEQTPFMQ MQASGYYPFA
VRKREEYQIC ESLIETFSKE AEIEDFFRLE DLNLSKDLRR DLFHFCSELI LNLFGHGYSP
NAQISVARNT ISIYDYSEKS FNPFTAEATT DGKGIKIMRD FMKRYKGVCE FKYEEGNPNV
TTLAFSDEIG EFKYNAPCFL LIEKESLYYP SNLNNIKIDK TCKELLIDAT NAYVWGSMAG
LFLDYLMRRT EDSQAFIILK LDKNDFTKDY LVSMVKEGPY PRIMIV
|
|---|
| |