Gene Cpin_3008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3008 
Symbol 
ID8359172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3720930 
End bp3723671 
Gene Length2742 bp 
Protein Length913 aa 
Translation table11 
GC content42% 
IMG OID644965188 
Producthypothetical protein 
Protein accessionYP_003122685 
Protein GI256422032 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCATT ATGATGCCGC AGGCCGTGTC GATTCTGTAA AGGAACGAAT CAATGACAAT 
GGGCCATTAG AAACTGTTGC AGTTACGGTT TACGATGAAT TGGGCAGAAT CAAACAGAAA
CGATTAGGTA TTACTGGTAC TACAGTACAA CTGGAAAGCG TCAATTATGA ACACAATCTG
CAAGATTGGA TGACAAGTAT CAATAAAGAT TATGTTAATA ATGTGGGCAG TACGAGTAAC
TGGTTCGGTG AGCAGCTTTC TTTCGATAGT GGTTTCTCCA AGCTCCAATA CAATGGTAAC
ATCGCAGGTG CCAAATGGAA AAGCAGATCA GATGGTTTAG GTCGCTTATA TGGTTATGAA
TATAACACAT CCCAACAGCT TATTCGGGCA GATTTTTTGC AACAGAATGG CGGAAGTAGC
AACTGGACAA ATGATCAGGT TGACTTTTCA GTAAATGGTA TCAGTTACGA CATTAATGGA
AATATCCTTG CATTGAAACA GGTGGGCATG GATGGTAAGA CAATCAAAAC GATCGATAGT
TTGAAATATG GCTATTTAAT AGGAAGTAAT AAGCTGAGCT ACGTCACAGA TAAGAAGAAT
GTAGCTAATA GTCGATTGGG CGATTTTAAA GAGATAGACA ATAACGAGGG CGCCGATTAT
ACCTATAATT CCGCGGGTTT TATTACAAAA GACGATAATA AGGACATTGC TACTATATAT
TATAACCACA ACAATATCCC AGCAATTGTA CAGGATAGTG GAAGAGGAAG CATTTTTTAC
CAAACCGGTG GTGACGGCAC TATACTTAGT AAAATTGTTA ATGACACATC AATTGCTGGC
TATGTGGATG TGACCTATTA CATGGATGGC TTTACATATA GGAACGATAC GCTAGAGTAT
ATAAACCATC CCGAAGGCCG TACTATTCCT GTGATAAAAA ATGGTATCCT TAATGGTTTC
AAAAAAGAAT ATTTTATAAA AGATCACCTG GGCAGCACTC GTGTGGTTTT GACTACCCGG
AGCGACACGG CTATTTATGC TGCTACAATG GAAAGTAGCA GAAGTGCTTT GGAGAATGCC
TTGTTTAGCA ATATAGATTT GACACGTTCA GCTAAGCCTT CTGGATACCC CAATGACCCG
ACTACCAATC CTAATGATTA CCTGATTAGG CTCAATGCAC AGAACGGCCA GAAGATCGGG
CCAGGTAAAG CGCTATATGT ACAGGCAGGT GACACCATAC AGGTAGCGGT AAAGGCTTTT
TATAAATCAA CAGCAGCAAG CACGTCTTAC GCAACCCCTG CTCAAATGTT GATGTCCGTA
GTCCAAGCTT TCCTTGCAAC CGGTGCTGTA AATGGTGCAC ACAATGCCAC TGGGCCGAAT
GCTCCTATTG CAAATACCTT TAGCAGTACA GATTATACCA CGTTATTAAA CCAGGACCCG
GCACAAAACC TAAGTGATAA GCCTAAAGCT TACTTACATG TAGTGGCTTA CGATAATCAA
TTTAAACTGA TACCGGAAAA CTCTTATGTG CGTCAAGTTC AGGGAGCGCC CGACGCCATT
CAAAATCTGG CTACAATACG CTACGCCATT CAAAAAAGCG GATTTGTGTA TATATTTGTA
AGCAACGAGA GTGCGCAAGA TGTGTTTTTC GATAATCTGG TGATAAACCA TACATCAGGC
CCGCTGGTTC AAAGTATGCA TTACTATCCA TTTGGTGTAA GTATGGCAGG TATCAGCACC
CAAGCATTTT CAGCGGCTGG ATACAGTAGA AATCGGATCT TATTTGCTGG AAAGGAACTT
CAAAGTAAGG AGTATCGAGA TGGTGGCTCA TTAGACTGGT ACGATTTCGG GAGCAGAATG
TATGATCCAC AAATAGGCCG CTGGATGATC GTAGATCCCA AAGCAAATAA AATGAGGCGT
TATTCTCCTT ACACGTTTGC ATTCAATAAC CCAATTAAGT TTATTGATCC TGATGGAATG
ATGCCCTGGA GCGATTATAT AAATTTAAAA GGCGAAAAAG TTGCTCACAG AGAGGATGGT
ACAAATAACG TAAATTTACT TTTAACTAAA AGCAAAGATG AAGCAACAGT CAATAGATTT
ATTGACAATG GTTATTACCT GATCAATCCC GGACAAGAAA TGCTTAGCGC GATGAATGAG
GCTTATACTT CAACTGAGGC GAATGGCACA GAATATTATT TTGAGATAGG CACGCGGGGA
GTAGTCAGTG CAGTTTTCCA GGGACTAGCA AGGGAAGTCC CGCCACAAGT AACTGCGCAA
GCACGCGCCA ATCTGGTACA GCGTGGAGAT CTTTACAGAA TGAGTGGACA TACGCATCCA
AGTAGGTGGA ATGATGCAAA AGATGAATTA CTTGAAATGG GTTTGGCCGA ACCGTCTTCA
CGCGCAAATA GGCCAGACCA TACTCCGGGA GATCTGGAAG ACTTGCAAGA GCATAATGAT
GACCGACCTA ACATTGTGTT AGGCTATAAG AGAGGTGGTG ATAGGAAAGC TGATCCAAAC
AATGCAATGG GAGGAAAAAT GATCCCTACA ATCTACCGAG CGCTAGGATT CTTCAATCAG
CATGGTCTTT TTGCTGAAAT AGATTGGGAT GATTTCCTAA AAGCAATGCG TAAATTTGAA
GCAGAACGCC GAAAAATTGA AGCATTCATT AGGCAGCAAG AAGAAGAGAG GCGAAGACGC
GAGAATAACA ATAATAATAA CAATCCTCCT CCAGTTCGAT AA
 
Protein sequence
MNHYDAAGRV DSVKERINDN GPLETVAVTV YDELGRIKQK RLGITGTTVQ LESVNYEHNL 
QDWMTSINKD YVNNVGSTSN WFGEQLSFDS GFSKLQYNGN IAGAKWKSRS DGLGRLYGYE
YNTSQQLIRA DFLQQNGGSS NWTNDQVDFS VNGISYDING NILALKQVGM DGKTIKTIDS
LKYGYLIGSN KLSYVTDKKN VANSRLGDFK EIDNNEGADY TYNSAGFITK DDNKDIATIY
YNHNNIPAIV QDSGRGSIFY QTGGDGTILS KIVNDTSIAG YVDVTYYMDG FTYRNDTLEY
INHPEGRTIP VIKNGILNGF KKEYFIKDHL GSTRVVLTTR SDTAIYAATM ESSRSALENA
LFSNIDLTRS AKPSGYPNDP TTNPNDYLIR LNAQNGQKIG PGKALYVQAG DTIQVAVKAF
YKSTAASTSY ATPAQMLMSV VQAFLATGAV NGAHNATGPN APIANTFSST DYTTLLNQDP
AQNLSDKPKA YLHVVAYDNQ FKLIPENSYV RQVQGAPDAI QNLATIRYAI QKSGFVYIFV
SNESAQDVFF DNLVINHTSG PLVQSMHYYP FGVSMAGIST QAFSAAGYSR NRILFAGKEL
QSKEYRDGGS LDWYDFGSRM YDPQIGRWMI VDPKANKMRR YSPYTFAFNN PIKFIDPDGM
MPWSDYINLK GEKVAHREDG TNNVNLLLTK SKDEATVNRF IDNGYYLINP GQEMLSAMNE
AYTSTEANGT EYYFEIGTRG VVSAVFQGLA REVPPQVTAQ ARANLVQRGD LYRMSGHTHP
SRWNDAKDEL LEMGLAEPSS RANRPDHTPG DLEDLQEHND DRPNIVLGYK RGGDRKADPN
NAMGGKMIPT IYRALGFFNQ HGLFAEIDWD DFLKAMRKFE AERRKIEAFI RQQEEERRRR
ENNNNNNNPP PVR