Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2978 |
Symbol | |
ID | 8359141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3671318 |
End bp | 3673684 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644965158 |
Product | protein of unknown function DUF214 |
Protein accession | YP_003122656 |
Protein GI | 256422003 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.163424 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAAACA ACTACTTTAA AATCGCCTGC CGGAATATTG TCCGCAACAA AGCCTTCTCC GCGATCAATA TCATGGGGCT GGCCCTGGGT ATTGCGTCAG GTCTGATACT GTTGTTATGG GTACAGGATG AACTACGCAC CGGCAGACAA TATGCCGATA TAGGGCGTTT ATTCCGCATC ATGGAGCACG AAATAGCCGA TGGAAGGATC GTAACGGATG AGGATACACC GGGTCTCATG GCGGATGAAG TCAAATCACA TATACCTGAA ATTGCCTATG CAGCTGGTAT CTCTACGAAT GAAGAGCATG TGTTGAGTGT AGGAGAAAAA TCCTCCCGGT TAACAGGGTG TTTTGCGGGA GCAGACTGGT TCCACATCTA CAATATACCC TTACTCGCCG GGGCTGCCAC ATCTGCGCTA AGCATGCCTG ATAATATTGC GATTTCCCGT AAGGTAGCCA CTGCTTTCTT CAATGATCCC TATACTGCCC TTGGCAAGAA CGTCCGTTTT GATGGTTCGG ATTATAAAGT AACGGCTGTA TTTGAAGATC TGCCACATCA ATCAACAGAT AAATATGACT ATCTGCTGAA CTGGCAACTT TACCTGAAAA GAGAACCCTG GCTCACTGTA TGGGAGAATA CAGGACCAGG CACCCGTATT CAGGTGAAAC CAGGTACTGA TCCTAAAAAA GTGGAAAGTA AACTGAAGAC CTTTCTGAAA GGCCGCAATA AAGATATCAG TGCCGTTTAC AACATCGAAT TGTTCCTGCA ACCGGAAGCG GACGCGTACC TTTATTCTAA CTTCAGCAAT GGACAGCGCG ATGGTGGTCG TATCGGGTAT GTACGGCTCT TTATTATTGT AGCCGCGTTT CTGCTGCTGA TCGCCACCAT CAATTTTATG AACCTGACCA CCGCACGTTC CATCAAACGC GCAAAAGAAG TAGGTGTCAG AAAAGCGATC GGCGCACAAC GCCTTTCACT GATCTGGCAG TTTATGCATG AAGCCCTGTT GATGACGGTG ATTGCCACCA TCCTGGCAAT TGCCACTGTA TGGTTAAGTT TACCCTTCTT CAACAGGCTG ACAGACAAGA CGCTGTCATT GCCCTTTGGA GATCCCGCTT TTGGCATATC GCTGTTAGGA ATACTCATTG TTACGTCTCT GCTATCCGGT AGCTATCCGG CATTCTTTCT CTCCGCTATC AAACCTGTAC GGGTGCTGAA AGGAACGTTG CAAACAGGCC CAAGCGCACA ATTATTCAGA CGTGGACTGG TAGTCTTTCA GTTTGTATTG TCTATCCTCA TGATCGTTGG TACGATCGTC GTTTATCGGC AGATGAAATA TATACAGCGC AAGAATCTGG GATTTGATCG CGAAAATATA ATCATCCTCC GTGGTGAAGG TGACATCGCG GCGCACTTCC AGACCTTTAA ACAGGAACTC TTACAGCAAC CGGATATTCA GTCTGTCTCA CATATGCAGA CCAATCCTTT GCAGAATCGC AATACTACGG ACATCGTAAA CTGGCAGGGA AAAGATCCCA GTCTGGCGAT TCAGTTCAAT AATACAGCAG TAGGATATGA TTTCGTTAAA ACAATGCACT TGCAAATGCT TCAGGGAAGG GACTTTTCGC CCGCCTACGG CGCCGATTCG ACCAATTATC TGATCAATGA ATCCACCGCG AAACGACTGG GGTATAAAGA TCCTGTCGGG CAACCATTGA CATTTGGCAA ACAGGCGGGT ATTATTATAG GCGTACTGAA AGACTTTCAT TTCAATTCAT TACATGTGCC TATTCGGCCT ATTATAATCC GTTTGAATGA AAAACAGGTG TACGATCATA TTCTGATTAA AACCCAGCCG GGACAAACGA AACAGGCACT CGCCGGTATT GAAAGACTTT GCCGGAAGAT GAATCCGGAC TATCCGTTTA CATATTCATT CCTGGATAGT GACTTTCAGA ACAGCTACAA AAGTGAGACC ATTGCCGGTA GTCTCATCGC CATCTTCGCC TGTCTTTCGA TATTTATCGC CTGTTTGGGT TTGTTTGGTC TGGCAGCCTT CACGGCTGAA CAGCGGACGA AAGAAATAGG AGTAAGAAAA GTACTGGGTG CTTCTGTGGT AAGTATCGTC AGACTGCTAT CCGGCGATTT CCTGAAACTA GTCTTCGCCG CTATTATCAT TGCGTCTCCC TTGGCCTGGT ATACTATGCG TCAGTGGCTT GATACATTTA GCTATAAGAT ATCCCTGTCC TGGAGCGTAT TCCTGCTGGC AGGATGTATC GCCATAATGA TAGCAATACT GACAATTGGG TTCCAGAGTG TAAAAGCGGC TTTACTGAAT CCGGTAAAGA GTCTGAAGGA GGAATAA
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Protein sequence | MLNNYFKIAC RNIVRNKAFS AINIMGLALG IASGLILLLW VQDELRTGRQ YADIGRLFRI MEHEIADGRI VTDEDTPGLM ADEVKSHIPE IAYAAGISTN EEHVLSVGEK SSRLTGCFAG ADWFHIYNIP LLAGAATSAL SMPDNIAISR KVATAFFNDP YTALGKNVRF DGSDYKVTAV FEDLPHQSTD KYDYLLNWQL YLKREPWLTV WENTGPGTRI QVKPGTDPKK VESKLKTFLK GRNKDISAVY NIELFLQPEA DAYLYSNFSN GQRDGGRIGY VRLFIIVAAF LLLIATINFM NLTTARSIKR AKEVGVRKAI GAQRLSLIWQ FMHEALLMTV IATILAIATV WLSLPFFNRL TDKTLSLPFG DPAFGISLLG ILIVTSLLSG SYPAFFLSAI KPVRVLKGTL QTGPSAQLFR RGLVVFQFVL SILMIVGTIV VYRQMKYIQR KNLGFDRENI IILRGEGDIA AHFQTFKQEL LQQPDIQSVS HMQTNPLQNR NTTDIVNWQG KDPSLAIQFN NTAVGYDFVK TMHLQMLQGR DFSPAYGADS TNYLINESTA KRLGYKDPVG QPLTFGKQAG IIIGVLKDFH FNSLHVPIRP IIIRLNEKQV YDHILIKTQP GQTKQALAGI ERLCRKMNPD YPFTYSFLDS DFQNSYKSET IAGSLIAIFA CLSIFIACLG LFGLAAFTAE QRTKEIGVRK VLGASVVSIV RLLSGDFLKL VFAAIIIASP LAWYTMRQWL DTFSYKISLS WSVFLLAGCI AIMIAILTIG FQSVKAALLN PVKSLKEE
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