Gene Cpin_2978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2978 
Symbol 
ID8359141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3671318 
End bp3673684 
Gene Length2367 bp 
Protein Length788 aa 
Translation table11 
GC content46% 
IMG OID644965158 
Productprotein of unknown function DUF214 
Protein accessionYP_003122656 
Protein GI256422003 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID[TIGR03434] Acidobacterial duplicated orphan permease 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.163424 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAAACA ACTACTTTAA AATCGCCTGC CGGAATATTG TCCGCAACAA AGCCTTCTCC 
GCGATCAATA TCATGGGGCT GGCCCTGGGT ATTGCGTCAG GTCTGATACT GTTGTTATGG
GTACAGGATG AACTACGCAC CGGCAGACAA TATGCCGATA TAGGGCGTTT ATTCCGCATC
ATGGAGCACG AAATAGCCGA TGGAAGGATC GTAACGGATG AGGATACACC GGGTCTCATG
GCGGATGAAG TCAAATCACA TATACCTGAA ATTGCCTATG CAGCTGGTAT CTCTACGAAT
GAAGAGCATG TGTTGAGTGT AGGAGAAAAA TCCTCCCGGT TAACAGGGTG TTTTGCGGGA
GCAGACTGGT TCCACATCTA CAATATACCC TTACTCGCCG GGGCTGCCAC ATCTGCGCTA
AGCATGCCTG ATAATATTGC GATTTCCCGT AAGGTAGCCA CTGCTTTCTT CAATGATCCC
TATACTGCCC TTGGCAAGAA CGTCCGTTTT GATGGTTCGG ATTATAAAGT AACGGCTGTA
TTTGAAGATC TGCCACATCA ATCAACAGAT AAATATGACT ATCTGCTGAA CTGGCAACTT
TACCTGAAAA GAGAACCCTG GCTCACTGTA TGGGAGAATA CAGGACCAGG CACCCGTATT
CAGGTGAAAC CAGGTACTGA TCCTAAAAAA GTGGAAAGTA AACTGAAGAC CTTTCTGAAA
GGCCGCAATA AAGATATCAG TGCCGTTTAC AACATCGAAT TGTTCCTGCA ACCGGAAGCG
GACGCGTACC TTTATTCTAA CTTCAGCAAT GGACAGCGCG ATGGTGGTCG TATCGGGTAT
GTACGGCTCT TTATTATTGT AGCCGCGTTT CTGCTGCTGA TCGCCACCAT CAATTTTATG
AACCTGACCA CCGCACGTTC CATCAAACGC GCAAAAGAAG TAGGTGTCAG AAAAGCGATC
GGCGCACAAC GCCTTTCACT GATCTGGCAG TTTATGCATG AAGCCCTGTT GATGACGGTG
ATTGCCACCA TCCTGGCAAT TGCCACTGTA TGGTTAAGTT TACCCTTCTT CAACAGGCTG
ACAGACAAGA CGCTGTCATT GCCCTTTGGA GATCCCGCTT TTGGCATATC GCTGTTAGGA
ATACTCATTG TTACGTCTCT GCTATCCGGT AGCTATCCGG CATTCTTTCT CTCCGCTATC
AAACCTGTAC GGGTGCTGAA AGGAACGTTG CAAACAGGCC CAAGCGCACA ATTATTCAGA
CGTGGACTGG TAGTCTTTCA GTTTGTATTG TCTATCCTCA TGATCGTTGG TACGATCGTC
GTTTATCGGC AGATGAAATA TATACAGCGC AAGAATCTGG GATTTGATCG CGAAAATATA
ATCATCCTCC GTGGTGAAGG TGACATCGCG GCGCACTTCC AGACCTTTAA ACAGGAACTC
TTACAGCAAC CGGATATTCA GTCTGTCTCA CATATGCAGA CCAATCCTTT GCAGAATCGC
AATACTACGG ACATCGTAAA CTGGCAGGGA AAAGATCCCA GTCTGGCGAT TCAGTTCAAT
AATACAGCAG TAGGATATGA TTTCGTTAAA ACAATGCACT TGCAAATGCT TCAGGGAAGG
GACTTTTCGC CCGCCTACGG CGCCGATTCG ACCAATTATC TGATCAATGA ATCCACCGCG
AAACGACTGG GGTATAAAGA TCCTGTCGGG CAACCATTGA CATTTGGCAA ACAGGCGGGT
ATTATTATAG GCGTACTGAA AGACTTTCAT TTCAATTCAT TACATGTGCC TATTCGGCCT
ATTATAATCC GTTTGAATGA AAAACAGGTG TACGATCATA TTCTGATTAA AACCCAGCCG
GGACAAACGA AACAGGCACT CGCCGGTATT GAAAGACTTT GCCGGAAGAT GAATCCGGAC
TATCCGTTTA CATATTCATT CCTGGATAGT GACTTTCAGA ACAGCTACAA AAGTGAGACC
ATTGCCGGTA GTCTCATCGC CATCTTCGCC TGTCTTTCGA TATTTATCGC CTGTTTGGGT
TTGTTTGGTC TGGCAGCCTT CACGGCTGAA CAGCGGACGA AAGAAATAGG AGTAAGAAAA
GTACTGGGTG CTTCTGTGGT AAGTATCGTC AGACTGCTAT CCGGCGATTT CCTGAAACTA
GTCTTCGCCG CTATTATCAT TGCGTCTCCC TTGGCCTGGT ATACTATGCG TCAGTGGCTT
GATACATTTA GCTATAAGAT ATCCCTGTCC TGGAGCGTAT TCCTGCTGGC AGGATGTATC
GCCATAATGA TAGCAATACT GACAATTGGG TTCCAGAGTG TAAAAGCGGC TTTACTGAAT
CCGGTAAAGA GTCTGAAGGA GGAATAA
 
Protein sequence
MLNNYFKIAC RNIVRNKAFS AINIMGLALG IASGLILLLW VQDELRTGRQ YADIGRLFRI 
MEHEIADGRI VTDEDTPGLM ADEVKSHIPE IAYAAGISTN EEHVLSVGEK SSRLTGCFAG
ADWFHIYNIP LLAGAATSAL SMPDNIAISR KVATAFFNDP YTALGKNVRF DGSDYKVTAV
FEDLPHQSTD KYDYLLNWQL YLKREPWLTV WENTGPGTRI QVKPGTDPKK VESKLKTFLK
GRNKDISAVY NIELFLQPEA DAYLYSNFSN GQRDGGRIGY VRLFIIVAAF LLLIATINFM
NLTTARSIKR AKEVGVRKAI GAQRLSLIWQ FMHEALLMTV IATILAIATV WLSLPFFNRL
TDKTLSLPFG DPAFGISLLG ILIVTSLLSG SYPAFFLSAI KPVRVLKGTL QTGPSAQLFR
RGLVVFQFVL SILMIVGTIV VYRQMKYIQR KNLGFDRENI IILRGEGDIA AHFQTFKQEL
LQQPDIQSVS HMQTNPLQNR NTTDIVNWQG KDPSLAIQFN NTAVGYDFVK TMHLQMLQGR
DFSPAYGADS TNYLINESTA KRLGYKDPVG QPLTFGKQAG IIIGVLKDFH FNSLHVPIRP
IIIRLNEKQV YDHILIKTQP GQTKQALAGI ERLCRKMNPD YPFTYSFLDS DFQNSYKSET
IAGSLIAIFA CLSIFIACLG LFGLAAFTAE QRTKEIGVRK VLGASVVSIV RLLSGDFLKL
VFAAIIIASP LAWYTMRQWL DTFSYKISLS WSVFLLAGCI AIMIAILTIG FQSVKAALLN
PVKSLKEE