Gene Cpin_2945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2945 
Symbol 
ID8359108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3623092 
End bp3624036 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content48% 
IMG OID644965126 
ProductABC transporter related 
Protein accessionYP_003122624 
Protein GI256421971 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.760604 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGATA ATATCGTAAA AATCGAAGGA CTGTTTCACC GTTACAGTAA AGACTGGGCG 
GTGCAGGACA TCAACTTCGA GATCAACAGG AACGGTATTG TAGGACTACT CGGTTCCAAT
GGCGCCGGAA AATCTACAAC CATGAACATC CTTTGCGGCG TATTGAGCCA AACCCGTGGC
CAGGTGTTAA TAGAAGGCAT CGACATGCGT ACTGACCCGG AAGAAGCCAA AAAACGGATC
GGCTTTTTGC CGCAAAACGC CCCGCTGTAC CTTGAACAAA CCGTAGACGA ATACCTCACT
TATTGTGCGC ACCTGCGGTT GATAGAAAAA CGAAAGATTC GCGAATCCGT GGACAAGGTG
AAAGAAAGAT GCGGCGTAGC GCATTTCAGC AAAAGGCTGA TCGGTAATTT ATCCGGCGGC
TACCGGCAAC GGGTAGGCAT TGCCCAGGCG ATCATTCACC GCCCATTGCT CGTTGTCCTG
GACGAGCCCA CCAACGGCCT CGATCCTAAC CAGATTCTGG AAGTACGACA ACTGATCAAA
GAAATTGCGA CAGACCGCTC AGTAATTTTT TCTTCCCATA TCCTTTCGGA AATACAGGCT
ACCTGCCAGG ATATCATCAT GATTGAAGGT GGCAAAATCG TGTTTAAAGA CACGATGGAT
ACTTTCAACA ATTACATCGA ACCGGATAGC CTGGTGGCCA CCATGGAAAA TCCACCTGCA
GCTGAAGAAC TGAGGGCAAT CGGAGGCGTA AAAGAAGTAG TGTTCCTCAC GGAAAAAACC
GTTCGTATGC GGTTCGATCC CACCGCGGAC ATTGCAGAAG AACTGGTGGA AATGAGCGTT
CACCGCAAAT GGCGCCTGAA AGAAATCACA CTGGAGAAAA GTTCGCTCGA TGCCATTTTC
GCACAGTTAT CCAACAAAAC ATTTAAACCA TCCGTTCAAT CATGA
 
Protein sequence
MQDNIVKIEG LFHRYSKDWA VQDINFEINR NGIVGLLGSN GAGKSTTMNI LCGVLSQTRG 
QVLIEGIDMR TDPEEAKKRI GFLPQNAPLY LEQTVDEYLT YCAHLRLIEK RKIRESVDKV
KERCGVAHFS KRLIGNLSGG YRQRVGIAQA IIHRPLLVVL DEPTNGLDPN QILEVRQLIK
EIATDRSVIF SSHILSEIQA TCQDIIMIEG GKIVFKDTMD TFNNYIEPDS LVATMENPPA
AEELRAIGGV KEVVFLTEKT VRMRFDPTAD IAEELVEMSV HRKWRLKEIT LEKSSLDAIF
AQLSNKTFKP SVQS