Gene Cpin_2920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2920 
Symbol 
ID8359082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3597690 
End bp3598805 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content44% 
IMG OID644965101 
ProductABC-2 type transporter 
Protein accessionYP_003122600 
Protein GI256421947 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.827824 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAT TACGCTTACT ACTGGAAAAG GAATTCAGGC AGATCTTCCG TGATAAAGGC 
TTACTGCCTA TCATCTTTGT GATGCCGATG ATGCAGCTGC TGATCATGCC ACTGGCTGCG
AATTTCGAGG TAAAGAATAT CAATCTGGCT GTTGTAGACA GGGATCATTC TACTTATACA
CAACAGATGG TGGCTAAGAT CGCCTCTTCC GGTTATTTTC ATATTACAGG TTATTATACG
GATTACACAC CCGCAAGACA ACAGATCGAA CGGGAGAAAG CGGACATTAT CCTGGAAATA
CCACCTCACT TTGAAGTAGA CCTTGTAAAG GAAAATAAGG CATCAGTATA TATAGCTGCT
GATGCGATTA ACGGCACAAA AGCCGGTCTG GGAAGCGCTT ATCTCAATAC CATACTGACG
GACTTTAACA ATGAGATCCG GATGAAGTGG TTGCCGGAAG CACCACCCGG ACCAGGTACT
ATAGACGTAA CGTTTTCAAA CTGGTTCAAC CCGAATATGA ACTATCGTTT GTATATGGTG
CCGGGAATAC TGGTATTACT GGTGACCATG GTAGGAGGCT TTATCGCCGC TTTAAATATC
GTAAAGGAAA AAGAGATCGG CACCATTGAA CAGATCAATG TAACACCTGT TAAAAAGTGG
CAGTTTATCC TTGGTAAGCT GATTCCCTTC TGGGTGATTG GCATGGTTGA CTTCACCCTG
GGATTGTTAC TGGCGAGATT TGTCTATGGT ATTATTCCGT TGGGTAGTCT GTTGCTCCTG
TACGCGTTTC TGGCTGTTTA CCTGGTAGCA TTGCTGGGAT TCGGCCTGTT GATCTCTACT
TACAGCGATA ACCAGTTGCA GGCGATGTTT GTGGCATTCT TCTTCATTAT GATCTTCATG
CTGATGAGTG GACTCTTTGT TTCGGTGGAT AATATGCCGC CATGGGCGAA GATGATTGCC
AACTTAACCC CGGTGACACA TTTTATAGAT GTGATGAGAA TGGTGGTGTT GAAAGGGAGT
CGCTTTGCGG ATATAAAAAT GCAATTCCTG TACGAACTGG CCTTTGCATT GGTATTGAAT
GGCTGGGCTA TCTGGAACTA TCGTAAAACA GCATAA
 
Protein sequence
MRTLRLLLEK EFRQIFRDKG LLPIIFVMPM MQLLIMPLAA NFEVKNINLA VVDRDHSTYT 
QQMVAKIASS GYFHITGYYT DYTPARQQIE REKADIILEI PPHFEVDLVK ENKASVYIAA
DAINGTKAGL GSAYLNTILT DFNNEIRMKW LPEAPPGPGT IDVTFSNWFN PNMNYRLYMV
PGILVLLVTM VGGFIAALNI VKEKEIGTIE QINVTPVKKW QFILGKLIPF WVIGMVDFTL
GLLLARFVYG IIPLGSLLLL YAFLAVYLVA LLGFGLLIST YSDNQLQAMF VAFFFIMIFM
LMSGLFVSVD NMPPWAKMIA NLTPVTHFID VMRMVVLKGS RFADIKMQFL YELAFALVLN
GWAIWNYRKT A