Gene Cpin_2919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2919 
Symbol 
ID8359081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3596587 
End bp3597693 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content47% 
IMG OID644965100 
ProductABC-2 type transporter 
Protein accessionYP_003122599 
Protein GI256421946 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.856849 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAT TCATGGTATT TGTCAGAAAG GAATTTTATC ACGTCTTCCG GGACAGGCGT 
ACCCTGCTGA TACTCTTCGG ACTGCCGATC ATGCAGATCC TCCTTTTCGG CTACGCGCTC
ACCACCGAGA TCAAAAATGC GGAGATCATT ATTGTAGATC ATGCCGGGGA TGCCGCTTCG
CAACAGCTGA CTACCATGAT CGCTGCCAGC AAATATTTTG ATATCAACAG AAGCACTGCT
TCAGATGAAG ATATTTATAA AGCATTTAGG CAAGGGAAGG TAAAATGCGC GGTGGTATTC
CCGACTGGCT TTGGAAATGA TCTGCTGAAC GGACAGGTGG CACAGTTACA GGTGATAGCT
GATGCTTCTG ATCCGAATAC GGCCAAAACG CTGACTAATT ATATTACTGC GATTGTAGCG
GATTATCAGC AACAGGTCAA TCCGACGGCT AACATCCCGA TGCGGATAGA CCCCGTTACC
CGTATGCTCT ATAATCCCGA ACTGAATGGT TCGATGAACT TTGTACCTGG TGTAATGGCC
CTGGTATTGA TGATCATCTG TACTACACTG ACCTCCGTAT CCATCGTAAG AGAAAAGGAA
ATGGGTACCA TGGAAATACT GCTGGTATCG CCATTCAAAC CCGTTTATGT GGTACTGGCA
AAAGCAGTGC CTTATCTGGC ACTGGCGATG GTCGATTTCG TCATCATACT GATACTAAGT
GTACTTGCCC TGGAAATGCC GGTCAGGGGA AACCTGGCAC TTCTGTTCTT CGAAAGCACA
CTGTTTATTA TCAGCTGTCT TTCCCTCGGA TTACTGATCT CCAGCGTCAC CCGTTCCCAG
CAGACGGCCA TGATGGTCTC TATGATGGGC ATGATGTTGC CTACCATTCT TTTTACAGGT
TTCATCTTTC CGTTGGAGAA TATGCCCTTA CCGCTTCAGT TGATTTCCAA TCTGCTGCCA
TCCCGCTGGT TTTACGTCAT CGTAAAAGCC GTGATGTTGA AAGGGTTGGG TATCGGAGTG
GTCTGGAAAG AAACACTCAT ACTGGCAGGT ATGACCCTGG TATTACTAAC CATCAGTATT
AAAAGCTTTA AAACACGGCT GTCATGA
 
Protein sequence
MKQFMVFVRK EFYHVFRDRR TLLILFGLPI MQILLFGYAL TTEIKNAEII IVDHAGDAAS 
QQLTTMIAAS KYFDINRSTA SDEDIYKAFR QGKVKCAVVF PTGFGNDLLN GQVAQLQVIA
DASDPNTAKT LTNYITAIVA DYQQQVNPTA NIPMRIDPVT RMLYNPELNG SMNFVPGVMA
LVLMIICTTL TSVSIVREKE MGTMEILLVS PFKPVYVVLA KAVPYLALAM VDFVIILILS
VLALEMPVRG NLALLFFEST LFIISCLSLG LLISSVTRSQ QTAMMVSMMG MMLPTILFTG
FIFPLENMPL PLQLISNLLP SRWFYVIVKA VMLKGLGIGV VWKETLILAG MTLVLLTISI
KSFKTRLS