Gene Cpin_2918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2918 
Symbol 
ID8359080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3595829 
End bp3596572 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content48% 
IMG OID644965099 
ProductABC transporter related 
Protein accessionYP_003122598 
Protein GI256421945 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.79893 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAACA AGGCAATCAC CTGTAAAGAT CTTACCAAAC GTTTCGGGGA CTTCTTTGCA 
GTCAATCATA TCTCATTCGA AGTGGAACAA GGGGAGATTT TCGGCTTCCT TGGCGCCAAT
GGCGCCGGCA AGACGACAGC TATGCGTATG CTCTGCGGAC TGTCTTACCC TACTTCAGGA
GAAGCGACCG TAGCGGGTTT TAATGTGTTC GGACAACAGG AAGAGATTAA AAAGAATATT
GGCTATATGA GTCAGAAATT CTCACTGTAT GAGAGTCTGA CCGTAAGAGA AAATATCCGT
TTCTATGGCG GCGTATATGG CTTATCAGAT AAACAGCTAA AAGAGAAGGG AGACGAACTG
ATTGAAAAGC TAGGTATGCA GCAGGAAGCA AAGATGATGG TGGGGAGTCT GCCGCTGGGC
TGGAAACAAA AGCTCGCATT CTCTGTAGCC ATTATCCACC AACCCCGGAT TGTATTCCTG
GATGAACCGA CTGGTGGCGT AGATCCCGTT ACAAGGAGAC AGTTCTGGGA CCTGATCTAT
GATGCAGCAG AAAGGGGGAT TACAGTATTC GTTACCACGC ACTACATGGA TGAAGCAGAA
TACTGTAACC GGATCTCCAT CATGGTGGAT GGGCGCATAG ATGCACTGGA TACACCAGCG
AACTTACGCC GGCAATTCGG GGCAAACTCC ATGAACGAAG TATTTTATGC ACTGGCGAGA
AGCGCAAAAC GCTCTGCCGA CTAA
 
Protein sequence
MNNKAITCKD LTKRFGDFFA VNHISFEVEQ GEIFGFLGAN GAGKTTAMRM LCGLSYPTSG 
EATVAGFNVF GQQEEIKKNI GYMSQKFSLY ESLTVRENIR FYGGVYGLSD KQLKEKGDEL
IEKLGMQQEA KMMVGSLPLG WKQKLAFSVA IIHQPRIVFL DEPTGGVDPV TRRQFWDLIY
DAAERGITVF VTTHYMDEAE YCNRISIMVD GRIDALDTPA NLRRQFGANS MNEVFYALAR
SAKRSAD