| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2891 |
|---|
| Symbol | |
|---|
| ID | 8359052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 3571934 |
|---|
| End bp | 3572692 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965071 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003122571 |
|---|
| Protein GI | 256421918 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTCA AAAACAAGGT AGCAGTAATA ACCGGCGGCA ACAGCGGAAT AGGATTCGGT
ATAGCCAAAG AATATGCGGC AGAAGGCGCA GTAGGTACAA TTGTGGGTAG AAATGAAGAG
ACGCTTAAAA GTGCTGTAGC TGCACTTGGC GATCAATTTA TTGGGATCAG ATGTGACGTA
ACTAAATTGG ATGAGCTGAC TGGCATGTTT GCCGAAACAG CGCAGAAATT CGGTAAACTG
GATGTACTGG TCGTAAATGC AGGTGGCGCC ATAGGTGCAG GTACTGCCGG AAATCTGGCG
GACGTTACAG AGGATAGTTT CGATAAAATA ATGAACCTGA ACCTCAAAAG CGTTTTCTTT
ACTGTACAGA AAGCACTCCC CTACTTAAAA GATGGCGCAT CGGTAGTGAT GATCGGCTCT
CTTGCAGCAC ACAAACCCCT GGACGGACTG ACGACCTATG GAGGCGCTAA AGCAGCTGTA
GTGAACTTTG CCCGCTCGTT TTCAAAAGAC CTGGCCAATA GGAAGATCCG GGTGAATATA
TTAAGTCCCG GAACAATTGA TACCCCGGTG TTCGAAAAGT TTGGAATTCC TACGGATATC
GCCATGGAGC TAAAACAACA TGTCGGCACC TCGAACCTCG TTCAGCGTAT AGGGCTCCCC
TCAGAAATGG GTAAAGTGGC CGTTTTCCTT GGTTCTGACG ACTCTTCTTT TGTAATCGGC
CAGGAAATCG TTGCCGATGG CGGAGTATAT CACTTTTAA
|
|---|
| Protein sequence | MRLKNKVAVI TGGNSGIGFG IAKEYAAEGA VGTIVGRNEE TLKSAVAALG DQFIGIRCDV
TKLDELTGMF AETAQKFGKL DVLVVNAGGA IGAGTAGNLA DVTEDSFDKI MNLNLKSVFF
TVQKALPYLK DGASVVMIGS LAAHKPLDGL TTYGGAKAAV VNFARSFSKD LANRKIRVNI
LSPGTIDTPV FEKFGIPTDI AMELKQHVGT SNLVQRIGLP SEMGKVAVFL GSDDSSFVIG
QEIVADGGVY HF
|
|---|
| |