Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2883 |
Symbol | |
ID | 8359044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3564815 |
End bp | 3565405 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644965063 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003122563 |
Protein GI | 256421910 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.86455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTATT ATAAGAAGCT CACGGATCCG GAGTTGGCCG ACCTGTTGAA GACCGGCGAC GAAGCTGCTT TTAAAGTGGT CTATCAGACG TATTGGGACA AATTGCTTGT CATCGCAGGC AAACGTCTGG GAGATATCAA TGAAGCAGAA GAAACCGTTC AGGATATCTT CCTGAATCTC TGGCGGCGTA GGGAAAAGTT TGAGCTGAAA GTCAATTTTG AACATTATTT TGCTGTGGCC GTCAAATTTG AGGTCATCAA CCGACTGGCA AAAAGGTCCA GGGAACAGCA AAGAAATGAT GCCTTTGCAA AAGAAACCCC GGTACAGCAG CTTCCTGTAG ATGTCCGTTT CGACCTGGAA ACGCTCCGTA AGGAACTGGA AACAACGATT AATACGCTTC CTCCCAAATG TCAGCTGATC TTCAGAATGA GCCGGGAAGG CAACCTGACG AATAAGAAAA TTGCAGAAGC CCTTCATATT TCAGAAAAGG CCGTCGAAAA ACATATCACT ACTGCACTGA AAGTGCTCAG GTCCCGTTTC GGATCCCGTT TTACCATTGT ATTGCTGTTA TTGTCAGGCA TGAAACATTA A
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Protein sequence | MTYYKKLTDP ELADLLKTGD EAAFKVVYQT YWDKLLVIAG KRLGDINEAE ETVQDIFLNL WRRREKFELK VNFEHYFAVA VKFEVINRLA KRSREQQRND AFAKETPVQQ LPVDVRFDLE TLRKELETTI NTLPPKCQLI FRMSREGNLT NKKIAEALHI SEKAVEKHIT TALKVLRSRF GSRFTIVLLL LSGMKH
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