Gene Cpin_2883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2883 
Symbol 
ID8359044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3564815 
End bp3565405 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content45% 
IMG OID644965063 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003122563 
Protein GI256421910 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.86455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTATT ATAAGAAGCT CACGGATCCG GAGTTGGCCG ACCTGTTGAA GACCGGCGAC 
GAAGCTGCTT TTAAAGTGGT CTATCAGACG TATTGGGACA AATTGCTTGT CATCGCAGGC
AAACGTCTGG GAGATATCAA TGAAGCAGAA GAAACCGTTC AGGATATCTT CCTGAATCTC
TGGCGGCGTA GGGAAAAGTT TGAGCTGAAA GTCAATTTTG AACATTATTT TGCTGTGGCC
GTCAAATTTG AGGTCATCAA CCGACTGGCA AAAAGGTCCA GGGAACAGCA AAGAAATGAT
GCCTTTGCAA AAGAAACCCC GGTACAGCAG CTTCCTGTAG ATGTCCGTTT CGACCTGGAA
ACGCTCCGTA AGGAACTGGA AACAACGATT AATACGCTTC CTCCCAAATG TCAGCTGATC
TTCAGAATGA GCCGGGAAGG CAACCTGACG AATAAGAAAA TTGCAGAAGC CCTTCATATT
TCAGAAAAGG CCGTCGAAAA ACATATCACT ACTGCACTGA AAGTGCTCAG GTCCCGTTTC
GGATCCCGTT TTACCATTGT ATTGCTGTTA TTGTCAGGCA TGAAACATTA A
 
Protein sequence
MTYYKKLTDP ELADLLKTGD EAAFKVVYQT YWDKLLVIAG KRLGDINEAE ETVQDIFLNL 
WRRREKFELK VNFEHYFAVA VKFEVINRLA KRSREQQRND AFAKETPVQQ LPVDVRFDLE
TLRKELETTI NTLPPKCQLI FRMSREGNLT NKKIAEALHI SEKAVEKHIT TALKVLRSRF
GSRFTIVLLL LSGMKH