Gene Cpin_2857 details

Gene Information

• Locus tag: Cpin_2857
• ID: 8359018
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: +
• Start bp: 3530707
• End bp: 3534153
• Gene Length: 3447 bp
• Protein Length: 1148 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 644965037
• Product: TonB-dependent receptor plug
• Protein accession: YP_003122537
• Protein GI: 256421884

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.22615
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 38
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATCA CTACAGTACT GCTCTTCTTC TCTCTGTTAC AAGCGAACGC CTCGGTGTTC 
GCACAAAAAA TGACACTGCA CGAAAGAGAT ATTTCTCTGA AACAGTTTTT CGTGGAAGTG 
AATAAACAAA CCGGATACAA TGTGGTATGG TCGGCAAAGA TGATCAAAGA TCTGCCACGA 
TTTAATGCCG ATTTTGATAA CACACCACTG GAAACAGCAC TGAAAGAGGT ATTGAAAAAT 
ACGCCGCTGA ATTACACGAT CCAGGATAAG AATATCAGTA TCGGGATGGC GCATGAAGGC 
GGTGCTGTTA AAAAGAATAA TATCGAGGCA GCCGATGCTG ACATTACCGT AACGGGTAAT 
GTCACTGATT CCAAAGGACA GACCATGCCT GGCGTGACTG TTACTGTTGC TGATAATCCT 
AAAATAGGTA CCGTTACAGA TGCCAACGGC AACTTCGTGC TGACTGTAAA GGAAGGCACA 
GTCTTGAGAA TTTCCTATGT TGGTTTTGTC AGTCAGATCT TTACGGTTAC CAGTACTAAT 
AAAGCACTGA AAGTTGTTTT GCAGGATGAT ATCAGGCGTG CGGAAGAAGT GGTGATCACG 
GCTTTTGGTA AGAAGGAACG TAAAGAGGCG GTTGTAGGAT CGGTGACTTC TGTAAGACCG 
GCTGATCTGA AGATTCCTGC GAGTAACCTG ACAATGGCCT TAGGCGGACA AGCCGCTGGT 
ATTATCGCTT ATCAGCCTAC CGGACAACCC GGTCAGGATA ACGCCCAGTT CTTTATCCGT 
GGTGTGACCA CATTTGGCTA TAAGGTAGAC CCGCTGATAT TGATCGATAA CATTGAACTC 
AGCACAAATG ACCTGGCCCG GTTGAACGTG GATGATATCG CCAGCTTCTC TATCCTGAAA 
GATGCCAGTG CTACCGCTCT ATATGGTGCA CGTGGTGCAA ACGGGGTGAT CCTGGTGAAT 
ACCAAGGAAG GTAAGATGGG TAAACTCGCC ATCAACGTAA GGCTGGAAAA TGCGATTTCC 
CAGAATACCC AATCCCTCAG GATCGCCGAT CCTGTTACCT ATATGAAGCT GTTCAACGAA 
GGTACACTGA CCCGTGATCC GACGCAGCCA CTCCCTTTTA ACCAGGATAA GATCAACAAC 
ACGATCAACA CTATTAATAA AGCCCCGGGT TATAATCCAT ATGTATATCC TGCTGTTGAC 
TGGCTAAGTG TACTGCTCAA GAAACGTACA AGTACCCAAC GCGGGAATAT GAGTATCAGT 
GGTGGTAGTC CGCTGGCAAG ATACTATGTG GCAGGCTCTT ATAACCTGGA TCATGGTAAC 
CTCGCAGAGG ACAGGAACAA CAACAATAAC AACAATATCA AATTTCAGAA CTACCAGTTA 
CGTTCCAATG TCAATCTGAA CCTTACCAAA ACAACGGAGA TAATATTACG ATTCAGCGGT 
ACCTTTAGTT CCTATCAGGG ACCATTGACA ACAGATGGTT CATTTAACTC GGATATCTAC 
AACCTGGCTT TACATACCAG TCCTGTTTTA TTCCCTGCTT ATTTCCCGGC AGATTCCGCA 
AACCTTACAA CGCAACATAT TCTTTTTGGC GCACCACAGG GTACTTTTAA CAGTATCCCT 
TTTAACAATC CTTATGCGCT GCTACTGAGA GGGCACAAAA CCTCTTCTGA ATCCCGTGTA 
TTAGCACAGC TGGAACTGAA CCAGAAGTTT GATTTTTTGA CGAAAGGACT ACATTTTCAT 
GGTTTGTTCG AGACCAACAG GTATGCTTAT TTTGATGCTA ATCTGGGGTA CAAGCCTTTC 
TACTATAATG TCGCTTCCTA TGACAGGGCT AAGAACAGCT ATTCCCTTAG CTGGCTGAAT 
CAGAATCCGG GAGATGCGAT CGAGTACCTG GAATATTTTC CTGGCGGCTC AACAATCAAT 
ACGAATGTAT ACATACAGGG TAACCTCGAT TATAGCAGAC AGTTCAAAGA TCACAATGTG 
TCTGGTACAC TCGTATTAAC CAGACAACAG GTCGTTTATT CCAATGCGAG CAAACTGGTG 
GATGCATTAC CACACAGAAA CATGGGATTG GCAGGTCGTG CCGCCTATAA CTATAAAGGA 
AAGTATTTCG CAGAATTTAA CTTCGGCTAT AACGGTTCAG AAAGATTTTC TGAAGAACAC 
CGCTTTGGGT TTTTCCCAAC AATCGGTGGT GGCTGGATCG TGTCAGAAGA GAAATTCTTC 
CAACCATTAC ATAATATTTT TGACAGGTTA AAAGTCCGGG GAAGCTATGG CCTGGTAGGT 
AACGACGCAA TCAGCGACAG AAGGTTCTTC TACAGTTCCA ATGTCAACCT TGCTGGAGGA 
GGTGGAGCTG AATTCGGTAT CAACCGTGGC TATAGCCGAC CTGGCGTTGC CATTAACAAC 
TATCCCGATC CTGAAGTGAC CTGGGAAACA TCTAAACAAC TGAACCTCGC GCTGGAGCTT 
ACAACACTTC GAAACCTGAA CATTACAGCG GAATATTACA ACTACAACCG CTATAACATT 
TTGCAGAAGC GCTCTTATAT TCCAACTACC AACGGACTGG AAGCAGATAT ATATGCCAAC 
CTGGGTAAGG CCCGCTCAAA AGGGATTGAC CTTTCTGCGG ATTACAGAAG TCAGCTGGGG 
AAAAACCTGC TGGTATCCGG TCGGGGTAAC TTTACATTGG CTACCAGTAA ATACACTTAC 
TATGAAGAAC CGGATTATCC GGAGCCATGG CGCCGTACTG TTGGTCACCC GATCCGTTCA 
GGTTATGGTT ATATTGCTGA ACGCCTTTTC GTAGACGATG CAGAAGCGCA GAGTTCCCCT 
TCGCAGATCT TTTCTTCTAC CGGTAAAGCG CCAAGAGGAG GTGACATTAA ATACTATGAT 
CTCAACGGAG ATGGCGTAAT CAATGAGCGG GATCAGACTT TTGTCGGCTA CCCGATGGTG 
CCGGAAATTA TATATGGTGG CGGCTTTTCC ATACAGTATA AAAGCTGGGA TCTCTCCGCA 
TTCTTCCAGG GACAGGCAAG GGTATCCTTC TTCATTGATC CTAAAAGAGT CAGCCCTTTT 
GTGCAGAGTC CGGATTCCTA TGTTTACGGC AATACGCAGC TGCTCAAACA GTTTGCGGAT 
AGTCACTGGT CAGAAGACAA CCAGGATATA TACGCGCTTT ATCCTCGTTT AGGGATCAAT 
CGTAACGATA TAGAGAATAA CCTGCAGCCG AGTACCTGGT GGCTGAGGGA TGGTTCTTAT 
CTGCGTCTTA AATCCGCAGA AATCGGTTAC TCATTACCAG CACCTGTCAT CAAGCGACTG 
GGCATCCAGA AATGCAGAAT TTATTTGAAT GGGATGAACC TGCTTACCTG GAGTTCTTTC 
AAGCTGTGGG ATCCGGAATT GGGTGGCAGC GGCTTCGCAT ATCCTATTCA GAAAGTATTT 
AATGCCGGTC TCAATGTCAA CCTCTAA 

 

Protein sequence

MKITTVLLFF SLLQANASVF AQKMTLHERD ISLKQFFVEV NKQTGYNVVW SAKMIKDLPR 
FNADFDNTPL ETALKEVLKN TPLNYTIQDK NISIGMAHEG GAVKKNNIEA ADADITVTGN 
VTDSKGQTMP GVTVTVADNP KIGTVTDANG NFVLTVKEGT VLRISYVGFV SQIFTVTSTN 
KALKVVLQDD IRRAEEVVIT AFGKKERKEA VVGSVTSVRP ADLKIPASNL TMALGGQAAG 
IIAYQPTGQP GQDNAQFFIR GVTTFGYKVD PLILIDNIEL STNDLARLNV DDIASFSILK 
DASATALYGA RGANGVILVN TKEGKMGKLA INVRLENAIS QNTQSLRIAD PVTYMKLFNE 
GTLTRDPTQP LPFNQDKINN TINTINKAPG YNPYVYPAVD WLSVLLKKRT STQRGNMSIS 
GGSPLARYYV AGSYNLDHGN LAEDRNNNNN NNIKFQNYQL RSNVNLNLTK TTEIILRFSG 
TFSSYQGPLT TDGSFNSDIY NLALHTSPVL FPAYFPADSA NLTTQHILFG APQGTFNSIP 
FNNPYALLLR GHKTSSESRV LAQLELNQKF DFLTKGLHFH GLFETNRYAY FDANLGYKPF 
YYNVASYDRA KNSYSLSWLN QNPGDAIEYL EYFPGGSTIN TNVYIQGNLD YSRQFKDHNV 
SGTLVLTRQQ VVYSNASKLV DALPHRNMGL AGRAAYNYKG KYFAEFNFGY NGSERFSEEH 
RFGFFPTIGG GWIVSEEKFF QPLHNIFDRL KVRGSYGLVG NDAISDRRFF YSSNVNLAGG 
GGAEFGINRG YSRPGVAINN YPDPEVTWET SKQLNLALEL TTLRNLNITA EYYNYNRYNI 
LQKRSYIPTT NGLEADIYAN LGKARSKGID LSADYRSQLG KNLLVSGRGN FTLATSKYTY 
YEEPDYPEPW RRTVGHPIRS GYGYIAERLF VDDAEAQSSP SQIFSSTGKA PRGGDIKYYD 
LNGDGVINER DQTFVGYPMV PEIIYGGGFS IQYKSWDLSA FFQGQARVSF FIDPKRVSPF 
VQSPDSYVYG NTQLLKQFAD SHWSEDNQDI YALYPRLGIN RNDIENNLQP STWWLRDGSY 
LRLKSAEIGY SLPAPVIKRL GIQKCRIYLN GMNLLTWSSF KLWDPELGGS GFAYPIQKVF 
NAGLNVNL