| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2847 |
|---|
| Symbol | |
|---|
| ID | 8359008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3512229 |
|---|
| End bp | 3513374 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644965027 |
|---|
| Product | glycoside hydrolase family 43 |
|---|
| Protein accession | YP_003122527 |
|---|
| Protein GI | 256421874 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000478451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC GAAGTATTGC TATCACATGG TTTGTATGCC TGTCTGCACT GGTATCCTAT
GGACAGTCCC CTACATACAG TAACCCAACG GCGCCGGTTG GCGATCCTGC TTTAACCGTA
CCGGCATCCG TCGTACCGGT GATGGATCAA TGGATGCGGG ATACATACGT TATGACCGGA
CCGGATGGAT ATTATTATAT GACCGGTACT ACAGCTACGC CTGGCAGAGT GTTTCCTGCA
GGGCGTGTGC ATTGCTGGGA TTATAATGAC GGACTGTATC TGTGGCGATC AAAAAATATG
CAGCAATGGG AGTCTATGGG AAGGATCTGG AGCTTTGACA AGGACGCTGC TCCCTGGCAG
CAAAAAGGAA AAGTATTGGA GCCTGGAGCG ATGTCTCCCA ACAAAGACCT GCTTGATTCA
TTCTACCGTG CAGTATGGGC GCCTGAGTTG CATTACATCA AAAGTAAAAA GAAATGGCTG
CTGATCGCCT GTATCAATGG TGGTATCGGA TCTTTTGTAC TGGAAAGTAT TTCAGGTAAG
CCGGAAGGAC CTTACAGAAA CATAAAAGGG AACAGGCAAA AGGCACTCTT CCCCAATATA
GATCTCAGCC TTTTTGAAGA TGATAACGGC GCGGTATATC TGATCGGACA TAATCATTTT
ATCACCAGGA TGAAGGACGA TCTGAGTGAT GTAGCAGCAC CTTTTCGCAG ATTGAAAGAA
ACACCCTATC AACAGGAACC CTATATTGAA GGTGTATTTA TCACCAGGCA TGAGGGGAAA
TACCAGCTCC TGCAAACTAT CTGGTCTGTA AAAAAAGCGG ATAGTACTTT TTCATACCTG
CGGGATGATA AAAATAGAAA GGATTCTTTG TATAGCTATG ATGTAGTAGT GGCAGAAGCT
GATAATATTT ATGGTCCTTA TGGTCCGCGT TATGCCGCTA TCTTACAAGG TGGTCATAAC
AATATCTTTA AGGACCTGGA TGGTTACTGG TGGTCAACTA CCTTCTTTAA CCCAAGAGGG
ATCATGGGTA CAAAGTTTAC GGTTACCTGC AGACCAGGAC TTGTACCGGT AAAATGGACA
GATGGGAAAC TGCGGCCGGA TACAGATCGT GCGGCAAAAT TCTATGACGC TCTTAAATCA
AATTAA
|
|---|
| Protein sequence | MMKRSIAITW FVCLSALVSY GQSPTYSNPT APVGDPALTV PASVVPVMDQ WMRDTYVMTG
PDGYYYMTGT TATPGRVFPA GRVHCWDYND GLYLWRSKNM QQWESMGRIW SFDKDAAPWQ
QKGKVLEPGA MSPNKDLLDS FYRAVWAPEL HYIKSKKKWL LIACINGGIG SFVLESISGK
PEGPYRNIKG NRQKALFPNI DLSLFEDDNG AVYLIGHNHF ITRMKDDLSD VAAPFRRLKE
TPYQQEPYIE GVFITRHEGK YQLLQTIWSV KKADSTFSYL RDDKNRKDSL YSYDVVVAEA
DNIYGPYGPR YAAILQGGHN NIFKDLDGYW WSTTFFNPRG IMGTKFTVTC RPGLVPVKWT
DGKLRPDTDR AAKFYDALKS N
|
|---|
| |