Gene Cpin_2808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2808 
Symbol 
ID8358969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3460652 
End bp3461644 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content49% 
IMG OID644964988 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003122488 
Protein GI256421835 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.627946 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAG AAGAGAAACA TATCGTCATA CTGGTGCCTT CCAATTCCGC ATTGATGGAC 
ATGGCAGGAC CCATGGAAGT ATTCAGCAGA GCAGCGGCAG AACAGACTAA AATGGATCAT
CATCTGCAAT ATATCGTACA TACTGTATCC GGTGAAGCCA CGAGGCAGAT CGTCACTTCA
TCTTTCCTGC CGATATTGTG TGAATCAACT TTCGAAGAAA TCAACTACCC CATCGATACA
CTGATCCTTT CCGGTATTCC TGCGGATGAT GATCAGCCAT TACATCCCAA TCTGCTTCCG
TGGATAGGCG CGCAAGCCAA CCGGGTACGG CGGATCGGTT CCGTTTGTTC TGGTTCTTTT
ATGCTGGCAC AGGCAGGCGT ATTAAATGGC AAAAGAGCTA CTACTCACTG GCGGCTCTGC
CAAAAGATGA AAGAAAAGTA TCCGGACGTA CTGGTAGAGC ATACCCCCGT CTTTGTAAAA
GACGGACACA TTTATACTTC CGCCGGCGTT ACCACCGGAA TGGACCTGGC GCTGGCACTG
GTAGAAGAAG ACATGGGGAG GACATTTGCG CTGGACATTG CCAGACAAAT GGTCCTCTTT
CTTAAACGTC CCGGTAATCA ATCACAATAT AGTACCATGC TGGCGGCACA GGCTACGGAC
TATACACCCA TCAACAATGC GTTGTCCTGG CTGCAGACGC ATCTCCATGA AGAGATCAGC
GTCGAGCGAC TGGCACAGGA AGCTGCCATG AGTCCCCGTA ATTTCGCCCG GATATTTGTA
CAGGAATTGC ATATTACCCC TGCCAGGTAT ATTGAAAAAC TGCGTGTCGA ACTGGCCTGC
AGAAGTCTGA CGGAAAAGAA ACTGACCCAG GCAGAAATCG CCTTACAAAG TGGCTTCGGT
AATGCAGACA ATATGCGCAA GGTATTCCTG CGGGTCATGG AAGCAACGCC TTCTGAGTAC
AGAAAACGCT TCAAAAGTGC GCTGCACACC TAA
 
Protein sequence
MSKEEKHIVI LVPSNSALMD MAGPMEVFSR AAAEQTKMDH HLQYIVHTVS GEATRQIVTS 
SFLPILCEST FEEINYPIDT LILSGIPADD DQPLHPNLLP WIGAQANRVR RIGSVCSGSF
MLAQAGVLNG KRATTHWRLC QKMKEKYPDV LVEHTPVFVK DGHIYTSAGV TTGMDLALAL
VEEDMGRTFA LDIARQMVLF LKRPGNQSQY STMLAAQATD YTPINNALSW LQTHLHEEIS
VERLAQEAAM SPRNFARIFV QELHITPARY IEKLRVELAC RSLTEKKLTQ AEIALQSGFG
NADNMRKVFL RVMEATPSEY RKRFKSALHT