| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2790 |
|---|
| Symbol | |
|---|
| ID | 8358951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3436057 |
|---|
| End bp | 3436605 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644964970 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_003122470 |
|---|
| Protein GI | 256421817 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.134722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGACT TTAGCGTACC CACAAGAGAG CAGATTTATC CTGGAAACGA AGCGGCCTTT
GACACATTGC AAAGAAGACT GGGAATGGTG CCGAATTTAT ATGCCACAAT CGCCTATTCC
GAAAACGGAC TGAATAAGTA CCTGGCCTTT CAGACCGCAA AAACCTCCCT CTATAACCGG
GAAAGGGATG CGGTCAGCTT GGTGATGGCA CAGGTGAACG GTTGTCGTTA TTGCCAGAGT
GCATATACGT CGATGGGCAG GAAAAATGGT ATATCAGAAG AAGAGTTGAT GGCTGTCAGA
ACAGGGAACA GCAGCCATCC GAGATTAAGC GCCTTAGCCG GCCAGACAAA GGAGATCGCG
GAAAATAAGG GGCGGGTGTC CGTTGACGCC CTTGAGCGCT TTTTTGAGGC TGGATATGAC
AAAGGGAACC TTGTAGATCT CATCCTGCAG ATCAGCGATA ACATCGCCAT GAATTATCTC
TATAATCTTA CCCAGATAGA AATAGACTTC CCACTGGCCC CCGAGCTGGT GGAAGAAAAC
AACGCCTGA
|
|---|
| Protein sequence | MIDFSVPTRE QIYPGNEAAF DTLQRRLGMV PNLYATIAYS ENGLNKYLAF QTAKTSLYNR
ERDAVSLVMA QVNGCRYCQS AYTSMGRKNG ISEEELMAVR TGNSSHPRLS ALAGQTKEIA
ENKGRVSVDA LERFFEAGYD KGNLVDLILQ ISDNIAMNYL YNLTQIEIDF PLAPELVEEN
NA
|
|---|
| |