| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2766 |
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| Symbol | |
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| ID | 8358927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3391829 |
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| End bp | 3392386 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644964946 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003122446 |
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| Protein GI | 256421793 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00104809 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACGCACG ACGGATACCA TATCTCTGCT GATGAAGCTA CTGAGGCACT CCGTAGCCGT
GATGCCGACG TATTCCGGAA TATTTACAAT GCGTACAGTG AAGAACTGTA TCTGCTGGCT
TACCGCTGGG TCAAGGATTA TGACCTGGCG AAGGAAGTCG TACAGGGTCT TTTTGCCCAT
TTGTGGGAAA AAGGGCCGGA GATTAACATT ACCGGAAATG TGCGGCATTA CCTGTATCGT
GCGGTTACTA ACAGAAGTAT CAATGAACTG AAGCGCAGGG CCCGTCATGT GAGTGAAGAA
GCGTTGCAAT GGCAGGCGGA TAGTGTTTCC CTGCATGATA TAACCGACCA TCTTTTACTG
CAGAAAGAGA TCATGCGGCT GGTACAGACC TTAGCGCCAC GTTGCCGGGA GATCTTCCTG
CTCAGTCGTT TCGACGGACT GGAACCTGCC GAGATTGCAG ATAAACTGGG CATTGCGGTC
AATACCGTCT ATTTCCAGCT GGCAGTGGCC CTGAAGCACC TGCGTACACA GTTGCTGAAT
GGAAAAAAAT TAGAGTAG
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| Protein sequence | MTHDGYHISA DEATEALRSR DADVFRNIYN AYSEELYLLA YRWVKDYDLA KEVVQGLFAH
LWEKGPEINI TGNVRHYLYR AVTNRSINEL KRRARHVSEE ALQWQADSVS LHDITDHLLL
QKEIMRLVQT LAPRCREIFL LSRFDGLEPA EIADKLGIAV NTVYFQLAVA LKHLRTQLLN
GKKLE
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