Gene Cpin_2672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2672 
Symbol 
ID8358832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3268134 
End bp3269294 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content46% 
IMG OID644964854 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003122355 
Protein GI256421702 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.228182 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACAATT CGGGTAAGGA TCAACAATAC TTTTTCAAGC TGCTCAGCAG GTATAACGAA 
GGAAAAGTTA CACCGGAAGA AGCGGCATTT GTTGATCGTT ACCTTGAATT ACTGGATTAC
CGGGAAAAAG ATGTTCTAAA AGATTTCGAC CAGCAAAAAG TCCAGATAGC GGCCAGTATG
CAGGAACGGC TGCTAGAAAG CATCCGGCAT GAGCCGGTTG TAAACCGTAT ATACCCTGTA
CGCAGATGGC TTACAGCAGC GGCTGCTGTC CTGTTATTAC TCGGTAGCGG ATATTATTTC
TTTGAGAGGC AACATACACC GGCAAAACAT CAGACGGCTC AGCATACGGA TATTCTTCCC
GGAAAAACCG GCGCCATTCT CACCTTAGCG GATGGCAGTA AAATTGTACT GGACAGTTCA
CGGAACGGCG TAATCGCTAT GCAGGGTAAC ACCACAATAC AACTGAACAA CGGAAAAATA
CGCTATAATA AAGGTGGCCA TGAAAGCTCC CCTGCAAGTA AGCCGGTGGG ATACAATACG
ATCACTACGC CTCGTGGCCG CCAGTATCAG CTGGTATTGC CTGACGGAAC CAGTGTATGG
CTGAATGCGG CCAGCAGCCT TAGCTATCCG ACTGATTTCA ATGGGAAGGA GCGCAGGGTA
AGGGTAAGTG GTGAGGCTTA TTTTGAAGTT GCCAGTAATG CCAGTCAACC ATTTATAGTA
ACAGTCAACG ATGCGACTAC CATCCAGGTA TTAGGCACGA AATTCAACAT CAACGCTTAC
AAAGATGAAT CCAGTATTAA TACGACCTTA TTACAGGGGG CAGTAAAGGT CACCTACCGG
AAGGCATCGC AACTGCTGAA ACCAGGACAA GCCGCACAGA TCAGTCAGGA GCTGCGGTTG
ATACCAACAG CTGATGTCAA CGGCGTAATC GCATGGAAAG AAGGTGTATT CGCATTTAAT
AATGCCGATC TGCCAACTGT CATGCGACAG CTCGCGCGAT GGTATGATAT TGAAGTGAGC
TATGAGGGCA GCGTATCAGC GGCTACGTTT ACAGGGGAAA TAGATAAAAG CCTGACCTTA
TCACAGGTAT TACAAGGATT AACAGCTACA AGCATCAACT ATAAAATCGA AGGAAACAGA
TTAATTATTA TTCAGCATTA A
 
Protein sequence
MYNSGKDQQY FFKLLSRYNE GKVTPEEAAF VDRYLELLDY REKDVLKDFD QQKVQIAASM 
QERLLESIRH EPVVNRIYPV RRWLTAAAAV LLLLGSGYYF FERQHTPAKH QTAQHTDILP
GKTGAILTLA DGSKIVLDSS RNGVIAMQGN TTIQLNNGKI RYNKGGHESS PASKPVGYNT
ITTPRGRQYQ LVLPDGTSVW LNAASSLSYP TDFNGKERRV RVSGEAYFEV ASNASQPFIV
TVNDATTIQV LGTKFNINAY KDESSINTTL LQGAVKVTYR KASQLLKPGQ AAQISQELRL
IPTADVNGVI AWKEGVFAFN NADLPTVMRQ LARWYDIEVS YEGSVSAATF TGEIDKSLTL
SQVLQGLTAT SINYKIEGNR LIIIQH