| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2655 |
|---|
| Symbol | |
|---|
| ID | 8358815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3243292 |
|---|
| End bp | 3244206 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644964837 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003122338 |
|---|
| Protein GI | 256421685 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.5275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGA AAAAAGCGCC GCCTGTATTT AACTCCGTAT CTGAATTACT CAGAGCATTG
GGACTACCTG CTCCGCAACA CCCATTACTC ACCGTCACCA ACTACGCGGA GATTACTGCT
GATGTGACCG AACTCTCCAA AGGGATGGTC CTGAATATGT ATAAGATCTC CCTTAAATTT
AACTTCAGGG GAAAGATTAA GTACGGACAA CAGTACTACG ACTTTGACGA AGGCGGACTG
AGTTTTGCAT CTCCAATGCA GGTGATTGCC GCAGGGGAGG AAGAAGCGGA TTACAGCGGA
CTGACCTTAC TCATCCATCC TGATTTCCTG CGTAATTATC CCCTGGCTAA AACAATCAAA
GATTATGGCT TCTTTGATTA CTCCGTGAAT GAAGCACTCG GTCTTTCCGA ACAGGAAAAA
GACGTCATCA TGGGCATCTT TGAAAGCATC AAACGGGAGC TACATGCAGC TATCGATCAC
TTTAGTCAGG ATATTATTAT CTCACAAATA GAACAGCTAC TCAATTACAG TAACCGTTTC
TACAACCGTC AGTTTATCAC CCGGAAAGCC GTGCACAACG ATCAGCTCTC CACTTTAGAT
GATATGTTGC GCAACTATTT CGATCGCAAT AATGCCTTGT TTGAAGGTAT CCCCGCTGTA
GAGGAAATAG CGGCTAAACT CAACGTGTCC CAACGTTATC TCAGTGATAT GTTACGCACA
CTGGTAGGCG TAAATACACA GCAATACATC CAGCTGAAAA TGATCCACAA GGCAAGGGAG
TTATTGAGTA CAACAGATCT TACTATCGCA GAAATAGCCT ATCAGCTGGG ATTTGAATAT
CCGCAGTCCT TCAATAAATT CTTTAAGAAA CAAACGACGC TCTCTCCGCT GGACTTCAGG
AAATCATTCA ACTAG
|
|---|
| Protein sequence | MGQKKAPPVF NSVSELLRAL GLPAPQHPLL TVTNYAEITA DVTELSKGMV LNMYKISLKF
NFRGKIKYGQ QYYDFDEGGL SFASPMQVIA AGEEEADYSG LTLLIHPDFL RNYPLAKTIK
DYGFFDYSVN EALGLSEQEK DVIMGIFESI KRELHAAIDH FSQDIIISQI EQLLNYSNRF
YNRQFITRKA VHNDQLSTLD DMLRNYFDRN NALFEGIPAV EEIAAKLNVS QRYLSDMLRT
LVGVNTQQYI QLKMIHKARE LLSTTDLTIA EIAYQLGFEY PQSFNKFFKK QTTLSPLDFR
KSFN
|
|---|
| |