| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2636 |
|---|
| Symbol | |
|---|
| ID | 8358796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3227765 |
|---|
| End bp | 3228958 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644964818 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003122319 |
|---|
| Protein GI | 256421666 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.695943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA GTTTATTCCC CCTGATGTTG GGCGGACTGG GAATTGGAAC AACAGAATTT
GTCATGATGG GATTACTGCC TGATATCGCG TTGGGCATGA AGATCACGAT ACCAGAGGCA
GGTCATATGA TCTCTTCCTA TGCCCTGGGC GTAGTAATCG GTGCGCCTCT ACTGGTATTG
ATGAGTGGCA GCTATCCGCC GAAGAAGATA CTGATCGGAC TCATGATCGT TTTTACTGCT
TTCAATGGCT TATCTGCTTT TGCACCTTCA CCTTTTACTT TGCTGCTCGC GCGCTTTTTC
TCAGGACTGC CGCATGGCGC TTTCTTTGGC GTGGGTTCAG TAGTGGCCAG CCGGCTGGCA
GATAAAGGCA AACAGGCACA GGCCATCTCT ATGATGTTTG CCGGTCTTAC GATCGCTAAC
CTCTTACTCG TACCAGTAGG TACCTGGGTT GGGCATCACT TTTTATGGCG TTATACCTTT
GGCATAGTAG CCCTGATCGG CGTGATTACA TTGATATTCC TGAAAGCCTG GTTACCGGCC
TTGCCTGCCG AACAGGAAGG TGATACCCGT TCCCAGTTCC AGATATTCAG GAACCCCGAA
ACATGGTTGA TCATTCTTAT CACCGCAATC GGTACCGGTG GATTATTCGC CTGGATCAGT
TATATCGCGC CTTTGATGAC CAATATCTCA CGTTTCCCTG CTGACAGCGT ATCCGGTATC
ATGGTACTGG CAGGATTCGG TATGGTGGTT GGAAACTTTA TCGGTGGTCG TATGGCAGAT
AAATTTGACC CTGCCAAAAC CTGTGCAGGT TTATTAGTCG CTATGGCTAT CACCCTGACC
TGTATCTACT TCTTTTCTGC CATTCAACCC GTATCACTGG TGCTGACCTT TATTGCAGGG
GCATTATCTA TCGCGCTGGC AGCACCTATC CAGATACTGA TGATAGGAAC GGCAAAAGGT
GCTGAAATGC TCGGTGCTGG TGTAACACAA GCTGCTTTTA ATATTGGTAA CTCCCTTGGT
GCATTCCTGG GTGGCCTGCC GCTCATCGCC GGTTATGGTT ATAACTCTCC GGTACTGGTG
GGTTCCTTAA TGGCCGTTGG CGGTGTGCTC TTTGCTGTCA TACTGATCAA AAGACAGGCT
GCTATGCCTG TGCCACAGAC AGCTCGTGTA AAATCAAGCG TAACCTTCCA CTAA
|
|---|
| Protein sequence | MKKSLFPLML GGLGIGTTEF VMMGLLPDIA LGMKITIPEA GHMISSYALG VVIGAPLLVL
MSGSYPPKKI LIGLMIVFTA FNGLSAFAPS PFTLLLARFF SGLPHGAFFG VGSVVASRLA
DKGKQAQAIS MMFAGLTIAN LLLVPVGTWV GHHFLWRYTF GIVALIGVIT LIFLKAWLPA
LPAEQEGDTR SQFQIFRNPE TWLIILITAI GTGGLFAWIS YIAPLMTNIS RFPADSVSGI
MVLAGFGMVV GNFIGGRMAD KFDPAKTCAG LLVAMAITLT CIYFFSAIQP VSLVLTFIAG
ALSIALAAPI QILMIGTAKG AEMLGAGVTQ AAFNIGNSLG AFLGGLPLIA GYGYNSPVLV
GSLMAVGGVL FAVILIKRQA AMPVPQTARV KSSVTFH
|
|---|
| |